Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0003964 | molecular_function | RNA-directed DNA polymerase activity |
A | 0004523 | molecular_function | RNA-DNA hybrid ribonuclease activity |
A | 0006278 | biological_process | RNA-templated DNA biosynthetic process |
B | 0003964 | molecular_function | RNA-directed DNA polymerase activity |
B | 0006278 | biological_process | RNA-templated DNA biosynthetic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 12 |
Details | binding site for residue T27 A 601 |
Chain | Residue |
A | LEU100 |
A | PRO236 |
A | TYR318 |
B | HOH628 |
A | LYS101 |
A | LYS103 |
A | TYR181 |
A | TYR188 |
A | PHE227 |
A | TRP229 |
A | LEU234 |
A | HIS235 |
site_id | AC2 |
Number of Residues | 3 |
Details | binding site for residue SO4 A 602 |
Chain | Residue |
A | LYS331 |
A | GLY333 |
A | GLN334 |
site_id | AC3 |
Number of Residues | 3 |
Details | binding site for residue SO4 A 603 |
Chain | Residue |
A | ARG277 |
A | GLN278 |
A | LYS281 |
site_id | AC4 |
Number of Residues | 3 |
Details | binding site for residue SO4 A 604 |
Chain | Residue |
A | SER515 |
A | GLU516 |
A | LEU517 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue EDO A 605 |
Chain | Residue |
A | LEU425 |
A | TRP426 |
A | TYR427 |
A | GLN509 |
A | ASP511 |
A | HOH741 |
site_id | AC6 |
Number of Residues | 3 |
Details | binding site for residue EDO A 606 |
Chain | Residue |
A | GLU6 |
A | SER162 |
A | SER163 |
site_id | AC7 |
Number of Residues | 2 |
Details | binding site for residue IOD A 607 |
Chain | Residue |
A | VAL118 |
A | MET164 |
site_id | AC8 |
Number of Residues | 1 |
Details | binding site for residue IOD A 608 |
site_id | AC9 |
Number of Residues | 1 |
Details | binding site for residue IOD A 610 |
site_id | AD1 |
Number of Residues | 2 |
Details | binding site for residue IOD A 611 |
Chain | Residue |
A | PRO247 |
A | LYS263 |
site_id | AD2 |
Number of Residues | 1 |
Details | binding site for residue IOD A 612 |
site_id | AD3 |
Number of Residues | 3 |
Details | binding site for residue IOD A 613 |
Chain | Residue |
A | ASP443 |
A | LEU551 |
A | IOD616 |
site_id | AD4 |
Number of Residues | 3 |
Details | binding site for residue IOD A 614 |
Chain | Residue |
A | TYR457 |
A | LEU551 |
A | IOD615 |
site_id | AD5 |
Number of Residues | 5 |
Details | binding site for residue IOD A 615 |
Chain | Residue |
A | TYR441 |
A | GLY544 |
A | ASN545 |
A | ASP549 |
A | IOD614 |
site_id | AD6 |
Number of Residues | 6 |
Details | binding site for residue IOD A 616 |
Chain | Residue |
A | ASP443 |
A | GLY444 |
A | ALA445 |
A | ASP549 |
A | SER553 |
A | IOD613 |
site_id | AD7 |
Number of Residues | 1 |
Details | binding site for residue PYZ A 617 |
site_id | AD8 |
Number of Residues | 2 |
Details | binding site for residue PYZ A 618 |
site_id | AD9 |
Number of Residues | 5 |
Details | binding site for residue DMS A 619 |
Chain | Residue |
A | TRP426 |
A | TYR427 |
A | GLN428 |
A | LEU525 |
A | LYS528 |
site_id | AE1 |
Number of Residues | 7 |
Details | binding site for residue SO4 B 501 |
Chain | Residue |
A | THR403 |
A | GLU404 |
A | TYR405 |
B | LYS331 |
B | GLN332 |
B | GLY333 |
B | LYS424 |
site_id | AE2 |
Number of Residues | 3 |
Details | binding site for residue EDO B 502 |
Chain | Residue |
B | TRP24 |
B | GLU399 |
B | TRP402 |
site_id | AE3 |
Number of Residues | 7 |
Details | binding site for residue EDO B 503 |
Chain | Residue |
B | ILE31 |
B | VAL35 |
B | ILE132 |
B | PRO133 |
B | SER134 |
B | HOH604 |
B | HOH610 |
site_id | AE4 |
Number of Residues | 2 |
Details | binding site for residue IOD B 507 |
Chain | Residue |
B | LEU209 |
B | TRP212 |
site_id | AE5 |
Number of Residues | 4 |
Details | binding site for residue PYZ B 508 |
Chain | Residue |
B | TYR232 |
B | GLN373 |
B | THR377 |
B | GLN407 |
site_id | AE6 |
Number of Residues | 5 |
Details | binding site for residue PYZ B 509 |
Chain | Residue |
B | VAL75 |
B | ASP76 |
B | PHE77 |
B | GLY152 |
B | THR409 |
site_id | AE7 |
Number of Residues | 4 |
Details | binding site for residue PYZ B 510 |
Chain | Residue |
B | PRO247 |
B | LYS249 |
B | ASP256 |
B | LYS259 |
site_id | AE8 |
Number of Residues | 5 |
Details | binding site for residue PYZ B 511 |
Chain | Residue |
B | TYR232 |
B | LEU234 |
B | TRP239 |
B | LYS374 |
B | GLU378 |
site_id | AE9 |
Number of Residues | 2 |
Details | binding site for residue DMS B 512 |
Chain | Residue |
B | TYR56 |
B | LYS126 |
site_id | AF1 |
Number of Residues | 3 |
Details | binding site for residue DMS B 513 |
Chain | Residue |
B | THR400 |
B | THR403 |
B | GLU404 |
site_id | AF2 |
Number of Residues | 2 |
Details | binding site for residue DMS B 514 |
Chain | Residue |
B | ILE270 |
B | ASN348 |
site_id | AF3 |
Number of Residues | 8 |
Details | binding site for residue DMS B 515 |
Chain | Residue |
A | ILE380 |
A | VAL381 |
B | PRO25 |
B | LEU26 |
B | PRO133 |
B | SER134 |
B | ILE135 |
B | ASN137 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 3 |
Details | BINDING: |
Chain | Residue | Details |
B | ASP110 | |
B | ASP185 | |
B | ASP186 | |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | SITE: Essential for RT p66/p51 heterodimerization |
Chain | Residue | Details |
B | TRP401 | |
B | TRP414 | |
A | ASP498 | |
A | ASP549 | |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | SITE: Essential for RT p66/p51 heterodimerization |
Chain | Residue | Details |
A | TRP401 | |
A | TRP414 | |
site_id | SWS_FT_FI4 |
Number of Residues | 1 |
Details | SITE: Cleavage; by viral protease; partial |
Chain | Residue | Details |
A | PHE440 | |