5CY4
Crystal structure of an oligoribonuclease from Acinetobacter baumannii
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0004527 | molecular_function | exonuclease activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0006259 | biological_process | DNA metabolic process |
A | 0016896 | molecular_function | RNA exonuclease activity, producing 5'-phosphomonoesters |
A | 0046872 | molecular_function | metal ion binding |
B | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
B | 0003676 | molecular_function | nucleic acid binding |
B | 0004527 | molecular_function | exonuclease activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0006259 | biological_process | DNA metabolic process |
B | 0016896 | molecular_function | RNA exonuclease activity, producing 5'-phosphomonoesters |
B | 0046872 | molecular_function | metal ion binding |
C | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
C | 0003676 | molecular_function | nucleic acid binding |
C | 0004527 | molecular_function | exonuclease activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0006259 | biological_process | DNA metabolic process |
C | 0016896 | molecular_function | RNA exonuclease activity, producing 5'-phosphomonoesters |
C | 0046872 | molecular_function | metal ion binding |
D | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
D | 0003676 | molecular_function | nucleic acid binding |
D | 0004527 | molecular_function | exonuclease activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0006259 | biological_process | DNA metabolic process |
D | 0016896 | molecular_function | RNA exonuclease activity, producing 5'-phosphomonoesters |
D | 0046872 | molecular_function | metal ion binding |
E | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
E | 0003676 | molecular_function | nucleic acid binding |
E | 0004527 | molecular_function | exonuclease activity |
E | 0005737 | cellular_component | cytoplasm |
E | 0006259 | biological_process | DNA metabolic process |
E | 0016896 | molecular_function | RNA exonuclease activity, producing 5'-phosphomonoesters |
E | 0046872 | molecular_function | metal ion binding |
F | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
F | 0003676 | molecular_function | nucleic acid binding |
F | 0004527 | molecular_function | exonuclease activity |
F | 0005737 | cellular_component | cytoplasm |
F | 0006259 | biological_process | DNA metabolic process |
F | 0016896 | molecular_function | RNA exonuclease activity, producing 5'-phosphomonoesters |
F | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | binding site for residue CA A 201 |
Chain | Residue |
A | ASP13 |
A | LEU14 |
A | GLU15 |
A | HOH328 |
A | HOH385 |
A | HOH403 |
site_id | AC2 |
Number of Residues | 7 |
Details | binding site for residue CA A 202 |
Chain | Residue |
A | HOH316 |
A | HOH321 |
A | HOH328 |
A | HOH345 |
A | ASP13 |
A | ASN108 |
A | ASP113 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue CA A 203 |
Chain | Residue |
A | VAL40 |
A | LYS173 |
C | VAL40 |
C | LYS173 |
site_id | AC4 |
Number of Residues | 7 |
Details | binding site for residue EDO A 204 |
Chain | Residue |
A | VAL102 |
A | PRO104 |
A | HIS129 |
A | ARG131 |
B | GLU140 |
B | LYS143 |
B | ARG144 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue CA B 201 |
Chain | Residue |
B | ASP13 |
B | LEU14 |
B | GLU15 |
B | HOH314 |
B | HOH318 |
B | HOH377 |
site_id | AC6 |
Number of Residues | 8 |
Details | binding site for residue CA B 202 |
Chain | Residue |
B | ASP13 |
B | ASN108 |
B | ASP113 |
B | HOH318 |
B | HOH321 |
B | HOH336 |
B | HOH377 |
B | HOH380 |
site_id | AC7 |
Number of Residues | 7 |
Details | binding site for residue CA C 201 |
Chain | Residue |
C | ASP13 |
C | ASN108 |
C | ASP113 |
C | HOH308 |
C | HOH320 |
C | HOH321 |
C | HOH371 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue CA C 202 |
Chain | Residue |
C | ASP13 |
C | LEU14 |
C | GLU15 |
C | HOH313 |
C | HOH321 |
E | HOH383 |
site_id | AC9 |
Number of Residues | 6 |
Details | binding site for residue CA D 201 |
Chain | Residue |
A | HOH309 |
A | HOH314 |
D | ASP13 |
D | LEU14 |
D | GLU15 |
D | HOH329 |
site_id | AD1 |
Number of Residues | 6 |
Details | binding site for residue CA D 202 |
Chain | Residue |
D | ASP13 |
D | ASN108 |
D | ASP113 |
D | HOH317 |
D | HOH322 |
D | HOH361 |
site_id | AD2 |
Number of Residues | 4 |
Details | binding site for residue CA D 203 |
Chain | Residue |
D | VAL40 |
D | LYS173 |
E | VAL40 |
E | LYS173 |
site_id | AD3 |
Number of Residues | 7 |
Details | binding site for residue CA E 201 |
Chain | Residue |
E | ASP13 |
E | ASN108 |
E | ASP113 |
E | HOH306 |
E | HOH309 |
E | HOH314 |
E | HOH380 |
site_id | AD4 |
Number of Residues | 6 |
Details | binding site for residue CA E 202 |
Chain | Residue |
E | ASP13 |
E | LEU14 |
E | GLU15 |
E | HOH306 |
E | HOH346 |
E | HOH376 |
site_id | AD5 |
Number of Residues | 8 |
Details | binding site for residue EDO E 203 |
Chain | Residue |
E | GLU140 |
E | LYS143 |
E | ARG144 |
E | HOH387 |
F | VAL102 |
F | PRO104 |
F | HIS129 |
F | ARG131 |
site_id | AD6 |
Number of Residues | 7 |
Details | binding site for residue CA F 201 |
Chain | Residue |
F | ASP13 |
F | ASN108 |
F | ASP113 |
F | HOH309 |
F | HOH312 |
F | HOH339 |
F | HOH346 |
site_id | AD7 |
Number of Residues | 6 |
Details | binding site for residue CA F 202 |
Chain | Residue |
F | HOH334 |
F | HOH351 |
F | ASP13 |
F | LEU14 |
F | GLU15 |
F | HOH312 |
site_id | AD8 |
Number of Residues | 6 |
Details | binding site for residue EDO F 203 |
Chain | Residue |
E | VAL102 |
E | ARG131 |
F | GLU140 |
F | LYS143 |
F | ARG144 |
F | HOH335 |