Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5CY4

Crystal structure of an oligoribonuclease from Acinetobacter baumannii

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000175	molecular_function	3'-5'-RNA exonuclease activity
A	0003676	molecular_function	nucleic acid binding
A	0004518	molecular_function	nuclease activity
A	0004527	molecular_function	exonuclease activity
A	0005737	cellular_component	cytoplasm
A	0006259	biological_process	DNA metabolic process
A	0016787	molecular_function	hydrolase activity
A	0016896	molecular_function	RNA exonuclease activity, producing 5'-phosphomonoesters
A	0046872	molecular_function	metal ion binding
B	0000175	molecular_function	3'-5'-RNA exonuclease activity
B	0003676	molecular_function	nucleic acid binding
B	0004518	molecular_function	nuclease activity
B	0004527	molecular_function	exonuclease activity
B	0005737	cellular_component	cytoplasm
B	0006259	biological_process	DNA metabolic process
B	0016787	molecular_function	hydrolase activity
B	0016896	molecular_function	RNA exonuclease activity, producing 5'-phosphomonoesters
B	0046872	molecular_function	metal ion binding
C	0000175	molecular_function	3'-5'-RNA exonuclease activity
C	0003676	molecular_function	nucleic acid binding
C	0004518	molecular_function	nuclease activity
C	0004527	molecular_function	exonuclease activity
C	0005737	cellular_component	cytoplasm
C	0006259	biological_process	DNA metabolic process
C	0016787	molecular_function	hydrolase activity
C	0016896	molecular_function	RNA exonuclease activity, producing 5'-phosphomonoesters
C	0046872	molecular_function	metal ion binding
D	0000175	molecular_function	3'-5'-RNA exonuclease activity
D	0003676	molecular_function	nucleic acid binding
D	0004518	molecular_function	nuclease activity
D	0004527	molecular_function	exonuclease activity
D	0005737	cellular_component	cytoplasm
D	0006259	biological_process	DNA metabolic process
D	0016787	molecular_function	hydrolase activity
D	0016896	molecular_function	RNA exonuclease activity, producing 5'-phosphomonoesters
D	0046872	molecular_function	metal ion binding
E	0000175	molecular_function	3'-5'-RNA exonuclease activity
E	0003676	molecular_function	nucleic acid binding
E	0004518	molecular_function	nuclease activity
E	0004527	molecular_function	exonuclease activity
E	0005737	cellular_component	cytoplasm
E	0006259	biological_process	DNA metabolic process
E	0016787	molecular_function	hydrolase activity
E	0016896	molecular_function	RNA exonuclease activity, producing 5'-phosphomonoesters
E	0046872	molecular_function	metal ion binding
F	0000175	molecular_function	3'-5'-RNA exonuclease activity
F	0003676	molecular_function	nucleic acid binding
F	0004518	molecular_function	nuclease activity
F	0004527	molecular_function	exonuclease activity
F	0005737	cellular_component	cytoplasm
F	0006259	biological_process	DNA metabolic process
F	0016787	molecular_function	hydrolase activity
F	0016896	molecular_function	RNA exonuclease activity, producing 5'-phosphomonoesters
F	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	binding site for residue CA A 201

Chain	Residue
A	ASP13
A	LEU14
A	GLU15
A	HOH328
A	HOH385
A	HOH403

site_id	AC2
Number of Residues	7
Details	binding site for residue CA A 202

Chain	Residue
A	HOH316
A	HOH321
A	HOH328
A	HOH345
A	ASP13
A	ASN108
A	ASP113

site_id	AC3
Number of Residues	4
Details	binding site for residue CA A 203

Chain	Residue
A	VAL40
A	LYS173
C	VAL40
C	LYS173

site_id	AC4
Number of Residues	7
Details	binding site for residue EDO A 204

Chain	Residue
A	VAL102
A	PRO104
A	HIS129
A	ARG131
B	GLU140
B	LYS143
B	ARG144

site_id	AC5
Number of Residues	6
Details	binding site for residue CA B 201

Chain	Residue
B	ASP13
B	LEU14
B	GLU15
B	HOH314
B	HOH318
B	HOH377

site_id	AC6
Number of Residues	8
Details	binding site for residue CA B 202

Chain	Residue
B	ASP13
B	ASN108
B	ASP113
B	HOH318
B	HOH321
B	HOH336
B	HOH377
B	HOH380

site_id	AC7
Number of Residues	7
Details	binding site for residue CA C 201

Chain	Residue
C	ASP13
C	ASN108
C	ASP113
C	HOH308
C	HOH320
C	HOH321
C	HOH371

site_id	AC8
Number of Residues	6
Details	binding site for residue CA C 202

Chain	Residue
C	ASP13
C	LEU14
C	GLU15
C	HOH313
C	HOH321
E	HOH383

site_id	AC9
Number of Residues	6
Details	binding site for residue CA D 201

Chain	Residue
A	HOH309
A	HOH314
D	ASP13
D	LEU14
D	GLU15
D	HOH329

site_id	AD1
Number of Residues	6
Details	binding site for residue CA D 202

Chain	Residue
D	ASP13
D	ASN108
D	ASP113
D	HOH317
D	HOH322
D	HOH361

site_id	AD2
Number of Residues	4
Details	binding site for residue CA D 203

Chain	Residue
D	VAL40
D	LYS173
E	VAL40
E	LYS173

site_id	AD3
Number of Residues	7
Details	binding site for residue CA E 201

Chain	Residue
E	ASP13
E	ASN108
E	ASP113
E	HOH306
E	HOH309
E	HOH314
E	HOH380

site_id	AD4
Number of Residues	6
Details	binding site for residue CA E 202

Chain	Residue
E	ASP13
E	LEU14
E	GLU15
E	HOH306
E	HOH346
E	HOH376

site_id	AD5
Number of Residues	8
Details	binding site for residue EDO E 203

Chain	Residue
E	GLU140
E	LYS143
E	ARG144
E	HOH387
F	VAL102
F	PRO104
F	HIS129
F	ARG131

site_id	AD6
Number of Residues	7
Details	binding site for residue CA F 201

Chain	Residue
F	ASP13
F	ASN108
F	ASP113
F	HOH309
F	HOH312
F	HOH339
F	HOH346

site_id	AD7
Number of Residues	6
Details	binding site for residue CA F 202

Chain	Residue
F	HOH334
F	HOH351
F	ASP13
F	LEU14
F	GLU15
F	HOH312

site_id	AD8
Number of Residues	6
Details	binding site for residue EDO F 203

Chain	Residue
E	VAL102
E	ARG131
F	GLU140
F	LYS143
F	ARG144
F	HOH335

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)