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5CTU

Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a fragment

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A0005524molecular_functionATP binding
A0006265biological_processDNA topological change
B0003677molecular_functionDNA binding
B0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
B0005524molecular_functionATP binding
B0006265biological_processDNA topological change
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MPD A 301
ChainResidue
ATHR80
AASP81
AHIS143
ATHR171
AHOH523

site_idAC2
Number of Residues5
Detailsbinding site for residue CL A 302
ChainResidue
AHOH598
AVAL88
AARG144
AASN145
AHOH518

site_idAC3
Number of Residues9
Detailsbinding site for residue 54X A 303
ChainResidue
AASN54
AGLU58
AASP81
AARG84
AGLY85
AILE86
AHOH421
AHOH508
AHOH513

site_idAC4
Number of Residues7
Detailsbinding site for residue MPD B 301
ChainResidue
BTHR80
BASP81
BHIS143
BLYS170
BGLY172
BMPD302
BHOH421

site_idAC5
Number of Residues5
Detailsbinding site for residue MPD B 302
ChainResidue
BHIS143
BVAL174
BGLU186
BMPD301
BHOH530

site_idAC6
Number of Residues7
Detailsbinding site for residue MG B 304
ChainResidue
BGLY0
BASN54
BHOH415
BHOH446
BHOH447
BHOH559
BHOH622

site_idAC7
Number of Residues18
Detailsbinding site for Di-peptide 54X B 303 and VAL B 2
ChainResidue
BSER1
BTHR3
BALA4
BLEU5
BASN54
BGLU58
BASP81
BARG84
BGLY85
BILE86
BPRO87
BHOH401
BHOH405
BHOH408
BHOH449
BHOH466
BHOH549
BHOH566

site_idAC8
Number of Residues18
Detailsbinding site for Di-peptide 54X B 303 and VAL B 2
ChainResidue
BSER1
BTHR3
BALA4
BLEU5
BASN54
BGLU58
BASP81
BARG84
BGLY85
BILE86
BPRO87
BHOH401
BHOH405
BHOH408
BHOH449
BHOH466
BHOH549
BHOH566

site_idAC9
Number of Residues18
Detailsbinding site for Di-peptide 54X B 303 and VAL B 2
ChainResidue
BSER1
BTHR3
BALA4
BLEU5
BASN54
BGLU58
BASP81
BARG84
BGLY85
BILE86
BPRO87
BHOH401
BHOH405
BHOH408
BHOH449
BHOH466
BHOH549
BHOH566

site_idAD1
Number of Residues18
Detailsbinding site for Di-peptide 54X B 303 and VAL B 2
ChainResidue
BARG84
BGLY85
BILE86
BPRO87
BHOH401
BHOH405
BHOH408
BHOH449
BHOH466
BHOH549
BHOH566
BSER1
BTHR3
BALA4
BLEU5
BASN54
BGLU58
BASP81

site_idAD2
Number of Residues18
Detailsbinding site for Di-peptide 54X B 303 and VAL B 2
ChainResidue
BSER1
BTHR3
BALA4
BLEU5
BASN54
BGLU58
BASP81
BARG84
BGLY85
BILE86
BPRO87
BHOH401
BHOH405
BHOH408
BHOH449
BHOH466
BHOH549
BHOH566

site_idAD3
Number of Residues18
Detailsbinding site for Di-peptide 54X B 303 and VAL B 2
ChainResidue
BSER1
BTHR3
BALA4
BLEU5
BASN54
BGLU58
BASP81
BARG84
BGLY85
BILE86
BPRO87
BHOH401
BHOH405
BHOH408
BHOH449
BHOH466
BHOH549
BHOH566

site_idAD4
Number of Residues18
Detailsbinding site for Di-peptide 54X B 303 and VAL B 2
ChainResidue
BSER1
BTHR3
BALA4
BLEU5
BASN54
BGLU58
BASP81
BARG84
BGLY85
BILE86
BPRO87
BHOH401
BHOH405
BHOH408
BHOH449
BHOH466
BHOH549
BHOH566

site_idAD5
Number of Residues18
Detailsbinding site for Di-peptide 54X B 303 and VAL B 2
ChainResidue
BSER1
BTHR3
BALA4
BLEU5
BASN54
BGLU58
BASP81
BARG84
BGLY85
BILE86
BPRO87
BHOH401
BHOH405
BHOH408
BHOH449
BHOH466
BHOH549
BHOH566

site_idAD6
Number of Residues19
Detailsbinding site for Di-peptide 54X B 303 and LEU B 5
ChainResidue
BGLY0
BSER1
BVAL2
BTHR3
BALA4
BASN54
BGLU58
BASP81
BARG84
BGLY85
BILE86
BILE102
BHOH402
BHOH403
BHOH405
BHOH449
BHOH466
BHOH566
BHOH594

Functional Information from PROSITE/UniProt
site_idPS00154
Number of Residues7
DetailsATPASE_E1_E2 E1-E2 ATPases phosphorylation site. DKTGTVI
ChainResidueDetails
AASP169-ILE175

244693

PDB entries from 2025-11-12

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