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5CDP

2.45A structure of etoposide with S.aureus DNA gyrase and DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A0005524molecular_functionATP binding
A0006259biological_processDNA metabolic process
A0006265biological_processDNA topological change
B0003677molecular_functionDNA binding
B0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
B0005524molecular_functionATP binding
B0006265biological_processDNA topological change
C0003677molecular_functionDNA binding
C0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
C0005524molecular_functionATP binding
C0006259biological_processDNA metabolic process
C0006265biological_processDNA topological change
D0003677molecular_functionDNA binding
D0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
D0005524molecular_functionATP binding
D0006265biological_processDNA topological change
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue NA A 501
ChainResidue
ATYR322
ATHR325
AGLN328
AHOH899
AHOH960

site_idAC2
Number of Residues6
Detailsbinding site for residue MN B 1001
ChainResidue
BHOH1145
EHOH106
BASP508
BASP510
BHOH1102
BHOH1142

site_idAC3
Number of Residues8
Detailsbinding site for residue MN D 701
ChainResidue
CHOH548
DGLU435
DASP508
DASP510
DHOH802
DHOH821
FDG8
HHOH2202

site_idAC4
Number of Residues5
Detailsbinding site for residue MN G 2101
ChainResidue
AHOH735
AHOH935
CHOH754
GDG2009
GHOH2220

site_idAC5
Number of Residues11
Detailsbinding site for residue EVP H 2101
ChainResidue
ASER84
BGLY436
BASP437
BARG458
BGLY459
CHOH612
EDG8
GDG2009
GDT2010
HDC2012
HDC2013

site_idAC6
Number of Residues5
Detailsbinding site for residue NA H 2102
ChainResidue
FHOH102
FHOH110
HDG2009
HHOH2204
HHOH2206

Functional Information from PROSITE/UniProt
site_idPS00177
Number of Residues9
DetailsTOPOISOMERASE_II DNA topoisomerase II signature. LVEGDSAGG
ChainResidueDetails
BLEU433-GLY441

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01898
ChainResidueDetails
BGLU435
BASP508
BASP510
DGLU435
DASP508
DASP510

site_idSWS_FT_FI2
Number of Residues4
DetailsSITE: Interaction with DNA => ECO:0000255|HAMAP-Rule:MF_01898
ChainResidueDetails
BLYS460
BASN463
DLYS460
DASN463

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PDB entries from 2024-05-01

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