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5CBT

Human Cyclophilin D Complexed with Inhibitor

Functional Information from GO Data
ChainGOidnamespacecontents
A0000413biological_processprotein peptidyl-prolyl isomerization
A0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
A0006457biological_processprotein folding
Functional Information from PDB Data
site_idAC1
Number of Residues10
Detailsbinding site for residue 4ZL A 201
ChainResidue
AARG55
AHOH366
AGLN63
AGLY72
AALA101
AASN102
AGLN111
APHE113
AHIS126
AHOH358

site_idAC2
Number of Residues4
Detailsbinding site for residue K A 202
ChainResidue
APGE207
APGE207
AHOH389
AHOH389

site_idAC3
Number of Residues5
Detailsbinding site for residue K A 203
ChainResidue
ATYR7
AASP160
ACYS161
AFMT204
AHOH316

site_idAC4
Number of Residues8
Detailsbinding site for residue FMT A 204
ChainResidue
ACYS40
ATHR41
ALYS49
ACYS161
AK203
AHOH312
AHOH315
AHOH316

site_idAC5
Number of Residues4
Detailsbinding site for residue PG4 A 205
ChainResidue
ATYR79
APRO95
AHIS131
AHOH353

site_idAC6
Number of Residues6
Detailsbinding site for residue EDO A 206
ChainResidue
AASP85
AGLU86
AHOH306
AHOH326
AHOH386
AHOH395

site_idAC7
Number of Residues8
Detailsbinding site for residue PGE A 207
ChainResidue
APRO58
ASER59
ATRP121
ALYS148
AK202
AK202
AHOH389
AHOH389

Functional Information from PROSITE/UniProt
site_idPS00170
Number of Residues18
DetailsCSA_PPIASE_1 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. YkgStFHRVIpsFMcQAG
ChainResidueDetails
ATYR48-GLY65

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues156
DetailsDomain: {"description":"PPIase cyclophilin-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00156","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsModified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"UniProtKB","id":"Q99KR7","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues3
DetailsModified residue: {"description":"N6-succinyllysine","evidences":[{"source":"UniProtKB","id":"Q99KR7","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"UniProtKB","id":"Q99KR7","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsModified residue: {"description":"S-nitrosocysteine","evidences":[{"source":"UniProtKB","id":"Q99KR7","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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