5CA7
Human DNA polymerase lambda- MgdGTP binary and complex with 6 paired DNA
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003677 | molecular_function | DNA binding |
A | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
A | 0006281 | biological_process | DNA repair |
A | 0016779 | molecular_function | nucleotidyltransferase activity |
A | 0034061 | molecular_function | DNA polymerase activity |
B | 0003677 | molecular_function | DNA binding |
B | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
B | 0006281 | biological_process | DNA repair |
B | 0016779 | molecular_function | nucleotidyltransferase activity |
B | 0034061 | molecular_function | DNA polymerase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 16 |
Details | binding site for residue DGT A 601 |
Chain | Residue |
A | ARG386 |
A | GLY508 |
A | ALA510 |
A | ASN513 |
A | ARG514 |
A | MG602 |
A | SO4603 |
A | HOH719 |
A | GLY416 |
A | SER417 |
A | ARG420 |
A | GLY426 |
A | ASP427 |
A | ASP429 |
A | TYR505 |
A | PHE506 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue MG A 602 |
Chain | Residue |
A | ASP427 |
A | ASP429 |
A | DGT601 |
A | HOH719 |
site_id | AC3 |
Number of Residues | 3 |
Details | binding site for residue SO4 A 603 |
Chain | Residue |
A | ARG514 |
A | ARG517 |
A | DGT601 |
Functional Information from PROSITE/UniProt
site_id | PS00522 |
Number of Residues | 20 |
Details | DNA_POLYMERASE_X DNA polymerase family X signature. GSYrRGkatCgDVDVLIthP |
Chain | Residue | Details |
B | GLY416-PRO435 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 84 |
Details | Region: {"description":"DNA-binding","evidences":[{"source":"PubMed","id":"14992725","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI2 |
Number of Residues | 18 |
Details | Region: {"description":"Involved in primer binding","evidences":[{"evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 16 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"17475573","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2PFP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2PFQ","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 6 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"17475573","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2PFO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2PFQ","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |