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5CA6

Crystallographic structure of apo porcine rotavirus TFR-41 VP8*

Functional Information from GO Data
ChainGOidnamespacecontents
A0019028cellular_componentviral capsid
A0019058biological_processviral life cycle
A0019062biological_processvirion attachment to host cell
A0046718biological_processsymbiont entry into host cell
B0019028cellular_componentviral capsid
B0019058biological_processviral life cycle
B0019062biological_processvirion attachment to host cell
B0046718biological_processsymbiont entry into host cell
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue GOL A 301
ChainResidue
AMET168
APHE170
ATYR175
ATHR186
APHE202
AARG210
AGLU213

site_idAC2
Number of Residues9
Detailsbinding site for residue GOL A 302
ChainResidue
AILE88
AVAL91
AARG173
APHE202
ACYS203
AHOH435
AHOH501
APRO86
ATHR87

site_idAC3
Number of Residues6
Detailsbinding site for residue GOL A 303
ChainResidue
AGLY179
ATHR180
AFMT305
AHOH426
BTHR115
BASP116

site_idAC4
Number of Residues6
Detailsbinding site for residue FMT A 304
ChainResidue
ATRP102
APHE122
ALYS145
ATHR196
AHOH429
AHOH453

site_idAC5
Number of Residues2
Detailsbinding site for residue FMT A 305
ChainResidue
ATHR180
AGOL303

site_idAC6
Number of Residues3
Detailsbinding site for residue FMT A 306
ChainResidue
ALYS139
APHE159
AHOH403

site_idAC7
Number of Residues6
Detailsbinding site for residue PLM A 307
ChainResidue
AARG101
ATHR105
AHIS155
ATYR189
ATHR191
ATYR194

site_idAC8
Number of Residues8
Detailsbinding site for residue GOL B 301
ChainResidue
BPRO86
BTHR87
BILE88
BVAL91
BILE92
BARG173
BPHE202
BHOH420

site_idAC9
Number of Residues6
Detailsbinding site for residue GOL B 302
ChainResidue
BMET168
BPHE170
BTYR175
BTHR186
BARG210
BGLU213

site_idAD1
Number of Residues10
Detailsbinding site for residue GOL B 303
ChainResidue
BTRP102
BPHE122
BLYS145
BPRO148
BASN193
BASP195
BTHR196
BHOH416
BHOH436
BHOH453

site_idAD2
Number of Residues7
Detailsbinding site for residue FMT B 304
ChainResidue
BTHR87
BILE88
BTHR185
BTHR186
BHOH411
BHOH476
BHOH508

site_idAD3
Number of Residues12
Detailsbinding site for residue VCA B 305
ChainResidue
BILE82
BTHR105
BASP142
BSER144
BHIS155
BVAL167
BLYS169
BTYR189
BTHR191
BTYR194
BHOH401
BHOH498

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PDB entries from 2024-07-17

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