Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5C9V

Structure of human Parkin G319A

Functional Information from GO Data
ChainGOidnamespacecontents
A0004842molecular_functionubiquitin-protein transferase activity
A0005739cellular_componentmitochondrion
A0005829cellular_componentcytosol
A0008270molecular_functionzinc ion binding
A0016567biological_processprotein ubiquitination
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 501
ChainResidue
ACYS150
ACYS154
ACYS212
AHIS215

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 502
ChainResidue
ACYS253
AHIS257
ACYS289
ACYS293

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 503
ChainResidue
ACYS449
ACYS457
AHIS461
ACYS446

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN A 504
ChainResidue
ACYS166
ACYS169
ACYS196
ACYS201

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN A 505
ChainResidue
ACYS238
ACYS241
ACYS260
ACYS263

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN A 506
ChainResidue
ACYS332
ACYS337
ACYS352
ACYS360

site_idAC7
Number of Residues4
Detailsbinding site for residue ZN A 507
ChainResidue
ACYS365
ACYS368
AHIS373
ACYS377

site_idAC8
Number of Residues4
Detailsbinding site for residue ZN A 508
ChainResidue
ACYS418
ACYS421
ACYS436
ACYS441

site_idAC9
Number of Residues5
Detailsbinding site for residue SO4 A 509
ChainResidue
AARG163
ALYS211
ATHR217
AARG420
AHOH624

site_idAD1
Number of Residues4
Detailsbinding site for residue SO4 A 510
ChainResidue
AASN454
AASN454
AARG455
AARG455

site_idAD2
Number of Residues3
Detailsbinding site for residue SO4 A 511
ChainResidue
AHIS279
AARG334
AGLY361

site_idAD3
Number of Residues2
Detailsbinding site for residue SO4 A 512
ChainResidue
AASN254
APRO294

site_idAD4
Number of Residues5
Detailsbinding site for residue SO4 A 513
ChainResidue
ALYS151
AHIS302
AARG305
ATYR312
AHOH603

site_idAD5
Number of Residues2
Detailsbinding site for residue SO4 A 514
ChainResidue
AARG348
ATYR372

site_idAD6
Number of Residues5
Detailsbinding site for residue GOL A 515
ChainResidue
ACYS368
AHIS373
AGLU376
ACYS377
ASER378

site_idAD7
Number of Residues6
Detailsbinding site for residue GOL A 516
ChainResidue
AVAL186
ALEU187
APRO189
APHE208
AHOH604
AHOH621

site_idAD8
Number of Residues3
Detailsbinding site for residue GOL A 517
ChainResidue
AASN295
ASER296
ALEU297

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues84
DetailsZN_FING: RING-type 0; atypical
ChainResidueDetails
ASER141-ALA225

site_idSWS_FT_FI2
Number of Residues55
DetailsZN_FING: RING-type 1 => ECO:0000255|PROSITE-ProRule:PRU01221
ChainResidueDetails
ACYS238-CYS293

site_idSWS_FT_FI3
Number of Residues64
DetailsZN_FING: IBR-type => ECO:0000255|PROSITE-ProRule:PRU01221
ChainResidueDetails
AASN313-CYS377

site_idSWS_FT_FI4
Number of Residues31
DetailsZN_FING: RING-type 2; atypical => ECO:0000255|PROSITE-ProRule:PRU01221
ChainResidueDetails
ACYS418-CYS449

site_idSWS_FT_FI5
Number of Residues1
DetailsACT_SITE: ACT_SITE => ECO:0000255|PROSITE-ProRule:PRU01221, ECO:0000269|PubMed:23770917
ChainResidueDetails
ACYS431

site_idSWS_FT_FI6
Number of Residues12
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01221
ChainResidueDetails
ACYS238
ACYS449
ACYS457
AHIS461
ACYS241
ACYS253
AHIS257
ACYS260
ACYS263
ACYS289
ACYS293
AHIS373

site_idSWS_FT_FI7
Number of Residues12
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01221, ECO:0000269|PubMed:23770917
ChainResidueDetails
ACYS332
ACYS436
ACYS441
ACYS446
ACYS337
ACYS352
ACYS360
ACYS365
ACYS368
ACYS377
ACYS418
ACYS421

site_idSWS_FT_FI8
Number of Residues1
DetailsMOD_RES: Phosphothreonine; by PINK1 => ECO:0000269|PubMed:18957282
ChainResidueDetails
ATHR175

site_idSWS_FT_FI9
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0000269|PubMed:18957282
ChainResidueDetails
ATHR217

site_idSWS_FT_FI10
Number of Residues3
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ISG15) => ECO:0000269|PubMed:27534820
ChainResidueDetails
ALYS349
ALYS369

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon