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5C7Q

Crystal Structure of the Bdellovibrio bacteriovorus Nucleoside Diphosphate Sugar Hydrolase

Functional Information from GO Data
ChainGOidnamespacecontents
A0005829cellular_componentcytosol
A0006753biological_processnucleoside phosphate metabolic process
A0016787molecular_functionhydrolase activity
A0019693biological_processribose phosphate metabolic process
A0047631molecular_functionADP-ribose diphosphatase activity
B0005829cellular_componentcytosol
B0006753biological_processnucleoside phosphate metabolic process
B0016787molecular_functionhydrolase activity
B0019693biological_processribose phosphate metabolic process
B0047631molecular_functionADP-ribose diphosphatase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue SO4 A 201
ChainResidue
AARG64
ALYS78
AGOL207
AHOH310
AHOH344
AHOH383

site_idAC2
Number of Residues6
Detailsbinding site for residue SO4 A 202
ChainResidue
BARG18
BGLN138
BHOH302
ATYR35
ATHR36
AGLY179

site_idAC3
Number of Residues7
Detailsbinding site for residue SO4 A 203
ChainResidue
AARG64
AHOH303
AHOH367
AHOH402
BARG37
BHOH356
BHOH364

site_idAC4
Number of Residues7
Detailsbinding site for residue GOL A 204
ChainResidue
ALEU51
AARG127
AASP128
AHOH305
AHOH316
AHOH366
AHOH401

site_idAC5
Number of Residues8
Detailsbinding site for residue GOL A 205
ChainResidue
ATYR19
ALEU20
ALEU41
APRO43
ALYS78
AHOH315
AHOH323
AHOH345

site_idAC6
Number of Residues9
Detailsbinding site for residue GOL A 206
ChainResidue
ALYS69
AVAL70
APHE71
AGLY159
ALYS160
AVAL161
ASER162
AHOH318
BHIS111

site_idAC7
Number of Residues8
Detailsbinding site for residue GOL A 207
ChainResidue
AHIS42
AALA45
AGLU119
ALYS165
ASO4201
AHOH351
AHOH377
BTYR116

site_idAC8
Number of Residues6
Detailsbinding site for residue PEG A 208
ChainResidue
ALYS105
APHE106
ALEU107
ATRP172
ATRP181
AHOH394

site_idAC9
Number of Residues8
Detailsbinding site for residue PEG A 209
ChainResidue
AGLN24
AGLN26
ATHR36
APHE176
AASN182
AHOH308
AHOH311
BARG18

site_idAD1
Number of Residues3
Detailsbinding site for residue PG0 A 210
ChainResidue
AHIS61
AVAL70
AHOH376

site_idAD2
Number of Residues5
Detailsbinding site for residue PGE A 211
ChainResidue
APRO30
AGLY32
BGLU5
BGLN28
BALA29

site_idAD3
Number of Residues11
Detailsbinding site for residue SO4 A 212
ChainResidue
AARG37
AGLY115
AHOH312
AHOH339
AHOH341
AHOH343
AHOH356
AHOH420
BARG64
BHOH346
BHOH358

site_idAD4
Number of Residues8
Detailsbinding site for residue SO4 A 213
ChainResidue
AARG18
ATYR19
AHOH333
BTYR35
BTHR36
BHOH306
BHOH392
BHOH394

site_idAD5
Number of Residues10
Detailsbinding site for residue SO4 B 201
ChainResidue
BHOH330
BHOH346
BHOH354
BARG64
BGLY77
BLYS78
BGOL203
BHOH318
BHOH322
BHOH327

site_idAD6
Number of Residues12
Detailsbinding site for residue GOL B 202
ChainResidue
AHIS111
BLYS69
BVAL70
BPHE71
BGLY159
BLYS160
BVAL161
BSER162
BPG0207
BHOH334
BHOH409
BHOH421

site_idAD7
Number of Residues8
Detailsbinding site for residue GOL B 203
ChainResidue
ATYR116
BHIS42
BGLU119
BLYS165
BSO4201
BHOH327
BHOH357
BHOH388

site_idAD8
Number of Residues4
Detailsbinding site for residue GOL B 204
ChainResidue
AARG18
BHIS131
BHOH368
BHOH411

site_idAD9
Number of Residues3
Detailsbinding site for residue GOL B 205
ChainResidue
BHIS3
BLEU4
BGLU5

site_idAE1
Number of Residues10
Detailsbinding site for residue GOL B 206
ChainResidue
ATYR116
AHOH365
BTYR19
BLEU20
BHIS42
BPRO43
BLYS78
BHOH335
BHOH336
BHOH382

site_idAE2
Number of Residues4
Detailsbinding site for residue PG0 B 207
ChainResidue
BHIS61
BVAL70
BVAL145
BGOL202

site_idAE3
Number of Residues4
Detailsbinding site for residue PGE B 208
ChainResidue
BLYS105
BLEU107
BPHE176
BASN182

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GkrdhnEetllTAkRELlEEtG
ChainResidueDetails
AGLY77-GLY98

239492

PDB entries from 2025-07-30

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