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5BNQ

Crystal structure of hRANKL-mRANK complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0005164molecular_functiontumor necrosis factor receptor binding
A0006955biological_processimmune response
A0016020cellular_componentmembrane
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue PO4 A 401
ChainResidue
AGLN163
AGLN163
AGLN163
AVAL313
AVAL313

site_idAC2
Number of Residues3
Detailsbinding site for residue CL A 402
ChainResidue
ALYS262
ALYS262
ALYS262

site_idAC3
Number of Residues3
Detailsbinding site for residue CL A 403
ChainResidue
ATRP264
AHIS271
ATHR261

site_idAC4
Number of Residues3
Detailsbinding site for residue CL A 404
ChainResidue
ALYS195
ALYS282
RLYS86

site_idAC5
Number of Residues3
Detailsbinding site for residue CL A 405
ChainResidue
AHIS189
AASP190
AARG191

site_idAC6
Number of Residues8
Detailsbinding site for residue PO4 R 301
ChainResidue
AGLN237
AMET239
ALYS257
APHE272
AASP300
RLYS97
RCYS125
RGLU126

site_idAC7
Number of Residues4
Detailsbinding site for residue PO4 R 302
ChainResidue
RCYS113
RTRP121
RASN147
RHOH401

site_idAC8
Number of Residues5
Detailsbinding site for residue PO4 R 303
ChainResidue
RALA117
RGLY118
RASN131
RLEU144
RGLN145

site_idAC9
Number of Residues5
Detailsbinding site for residue NA R 304
ChainResidue
RCYS134
RALA135
RPHE138
RSER161
RVAL163

site_idAD1
Number of Residues4
Detailsbinding site for residue CL R 305
ChainResidue
RHIS90
RLYS91
RPRO110
RARG111

site_idAD2
Number of Residues2
Detailsbinding site for residue CL R 306
ChainResidue
RHIS120
RASN122

Functional Information from PROSITE/UniProt
site_idPS00652
Number of Residues35
DetailsTNFR_NGFR_1 TNFR/NGFR family cysteine-rich region signature. Ctqerh.Yehlgr.....C..Csr.Cepgkylssk..Ctpts..DSVC
ChainResidueDetails
RCYS35-CYS69

site_idPS01186
Number of Residues16
DetailsEGF_2 EGF-like domain signature 2. CaCtaGYhwnsdcecC
ChainResidueDetails
RCYS113-CYS128

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues149
DetailsDomain: {"description":"THD","evidences":[{"source":"PROSITE-ProRule","id":"PRU01387","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues3
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues34
DetailsRepeat: {"description":"TNFR-Cys 1"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues41
DetailsRepeat: {"description":"TNFR-Cys 2"}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues37
DetailsRepeat: {"description":"TNFR-Cys 3"}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues40
DetailsRepeat: {"description":"TNFR-Cys 4"}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues5
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues1
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"source":"PubMed","id":"23039992","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

246905

PDB entries from 2025-12-31

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