5BJO

Crystal structure of the Corn RNA aptamer in complex with DFHO, site-specific 5-iodo-U

Functional Information from PDB Data

site_id	AC1
Number of Residues	8
Details	binding site for residue K E 101

Chain	Residue
E	G13
E	G16
E	IU17
E	G23
E	G26
E	K102
E	HOH213
E	HOH219

---

site_id	AC2
Number of Residues	9
Details	binding site for residue K E 102

Chain	Residue
E	G13
E	G15
E	G16
E	G22
E	G23
E	G25
E	G26
E	K101
E	G12

---

site_id	AC3
Number of Residues	6
Details	binding site for residue MG E 103

Chain	Residue
E	HOH210
E	HOH211
E	HOH216
E	HOH227
E	HOH228
E	HOH235

---

site_id	AC4
Number of Residues	5
Details	binding site for residue MG E 104

Chain	Residue
E	A7
E	G8
E	HOH204
E	HOH212
E	HOH214

---

site_id	AC5
Number of Residues	6
Details	binding site for residue MG E 105

Chain	Residue
E	HOH209
E	HOH225
E	HOH226
E	HOH232
E	HOH234
E	HOH237

---

site_id	AC6
Number of Residues	9
Details	binding site for residue K Y 101

Chain	Residue
Y	G12
Y	G13
Y	G15
Y	G16
Y	G22
Y	G23
Y	G25
Y	G26
Y	K102

---

site_id	AC7
Number of Residues	8
Details	binding site for residue K Y 102

Chain	Residue
Y	G13
Y	G16
Y	IU17
Y	G23
Y	G26
Y	K101
Y	HOH207
Y	HOH211

---

site_id	AC8
Number of Residues	5
Details	binding site for residue MG Y 103

Chain	Residue
Y	G23
Y	A24
Y	G25
Y	HOH206
Y	HOH210

---

site_id	AC9
Number of Residues	11
Details	binding site for residue 747 Y 104

Chain	Residue
E	G12
E	A14
E	G25
Y	A11
Y	G12
Y	G15
Y	G22
Y	A24
Y	G25
Y	HOH202
Y	HOH209

---

site_id	AD1
Number of Residues	12
Details	binding site for Di-nucleotide G Y 16 and IU Y 17

Chain	Residue
Y	G13
Y	G15
Y	C18
Y	U19
Y	G20
Y	A21
Y	G22
Y	G23
Y	K101
Y	K102
Y	HOH208
Y	HOH211

---

site_id	AD2
Number of Residues	11
Details	binding site for Di-nucleotide IU Y 17 and C Y 18

Chain	Residue
Y	G9
Y	G13
Y	G16
Y	U19
Y	G20
Y	A21
Y	C28
Y	A29
Y	K102
Y	HOH211
Y	HOH213

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