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5B2Q

Crystal structure of Francisella novicida Cas9 RHA in complex with sgRNA and target DNA (TGG PAM)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003723molecular_functionRNA binding
A0004519molecular_functionendonuclease activity
A0046872molecular_functionmetal ion binding
A0051607biological_processdefense response to virus
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 1701
ChainResidue
ACYS460
ACYS657
ACYS814
ACYS817

site_idAC2
Number of Residues6
Detailsbinding site for residue NA A 1702
ChainResidue
AHOH2338
APHE647
AASP649
AHOH1850
AHOH2200
AHOH2206

site_idAC3
Number of Residues6
Detailsbinding site for residue NA A 1703
ChainResidue
AASN1248
AHOH1975
AHOH2003
AHOH2323
AHOH2369
BHOH534

site_idAC4
Number of Residues4
Detailsbinding site for residue CL A 1704
ChainResidue
ALYS564
APHE602
AHOH2267
AHOH2334

site_idAC5
Number of Residues5
Detailsbinding site for residue CL A 1705
ChainResidue
ALYS366
ALYS370
ATRP395
AGLU399
AHOH2079

site_idAC6
Number of Residues5
Detailsbinding site for residue CA A 1706
ChainResidue
AASP11
AGLU903
AHIS1162
AHOH1851
AHOH1870

site_idAC7
Number of Residues7
Detailsbinding site for residue CA A 1707
ChainResidue
AASP66
AHOH1931
BA60
BHOH318
BHOH458
BHOH479
BHOH493

site_idAC8
Number of Residues7
Detailsbinding site for residue CA A 1708
ChainResidue
AHOH1804
AHOH2088
AHOH2335
AHOH2342
CHOH111
CHOH117
CHOH157

site_idAC9
Number of Residues8
Detailsbinding site for residue CA A 1709
ChainResidue
AASP66
AHOH1808
BHOH267
BHOH288
BHOH368
BHOH398
BHOH458
BHOH520

site_idAD1
Number of Residues6
Detailsbinding site for residue CA A 1710
ChainResidue
AVAL402
AHOH2283
AHOH2299
BU83
BHOH335
BHOH503

site_idAD2
Number of Residues6
Detailsbinding site for residue CA A 1711
ChainResidue
AHOH1901
AHOH1906
AHOH2387
BHOH218
BHOH257
BHOH490

site_idAD3
Number of Residues5
Detailsbinding site for residue CA A 1712
ChainResidue
ASER507
AHOH2286
AHOH2327
BHOH336
BHOH440

site_idAD4
Number of Residues5
Detailsbinding site for residue CA A 1713
ChainResidue
ALYS1415
AASP1417
AHOH1902
AHOH2332
AHOH2336

site_idAD5
Number of Residues7
Detailsbinding site for residue CA A 1714
ChainResidue
AHOH1948
AHOH2059
AHOH2242
BHOH282
BHOH506
CHOH103
CHOH152

site_idAD6
Number of Residues4
Detailsbinding site for residue CA A 1715
ChainResidue
AGLU1231
AASN1234
AASP1498
ASER1499

site_idAD7
Number of Residues6
Detailsbinding site for residue EDO A 1716
ChainResidue
ALYS45
ATYR48
ALEU50
ALEU51
AVAL911
AHOH2153

site_idAD8
Number of Residues8
Detailsbinding site for residue EDO A 1717
ChainResidue
AASP90
ATHR91
ATYR332
AASN335
APHE336
ATYR345
AHOH1914
AHOH2279

site_idAD9
Number of Residues6
Detailsbinding site for residue EDO A 1718
ChainResidue
AHIS394
ALEU397
AGLY398
AHOH2016
BHOH226
BHOH370

site_idAE1
Number of Residues8
Detailsbinding site for residue EDO A 1719
ChainResidue
ALEU626
ATYR627
AILE628
ATYR656
AARG1093
AGLU1097
AHOH1990
AHOH2099

site_idAE2
Number of Residues6
Detailsbinding site for residue EDO A 1720
ChainResidue
AARG625
ATYR627
ASER1118
APHE1119
AHOH1972
AHOH2165

site_idAE3
Number of Residues6
Detailsbinding site for residue EDO A 1721
ChainResidue
ALYS459
AGLY645
APHE647
AASN658
AHOH1806
AHOH2080

site_idAE4
Number of Residues6
Detailsbinding site for residue EDO A 1722
ChainResidue
APRO1251
ATYR1265
ATYR1329
BEDO110
BEDO116
BHOH379

site_idAE5
Number of Residues5
Detailsbinding site for residue EDO A 1723
ChainResidue
AASN1089
AGLY1090
AHOH1892
CDC21
CDT22

site_idAE6
Number of Residues7
Detailsbinding site for residue EDO A 1724
ChainResidue
ASER105
AILE107
AASP406
APRO447
APRO448
AHOH2048
AHOH2066

site_idAE7
Number of Residues7
Detailsbinding site for residue EDO A 1725
ChainResidue
ALEU6
ASER21
AALA22
APHE23
AASN37
AASN877
AASN880

site_idAE8
Number of Residues4
Detailsbinding site for residue EDO A 1726
ChainResidue
AGLN478
ATYR530
ALYS531
AASP534

site_idAE9
Number of Residues4
Detailsbinding site for residue EDO A 1727
ChainResidue
ASER899
AALA901
APHE904
AASN1089

site_idAF1
Number of Residues8
Detailsbinding site for residue ACT A 1728
ChainResidue
AASN1248
ASER1368
AARG1370
APHE1398
AHOH1977
AHOH2003
BC44
BHOH228

site_idAF2
Number of Residues8
Detailsbinding site for residue ACT A 1729
ChainResidue
AGLN92
ATHR1458
ATRP1459
AASP1460
AASN1462
AHOH1968
AHOH2195
BA50

site_idAF3
Number of Residues7
Detailsbinding site for residue NA B 101
ChainResidue
BG28
BU30
BU45
BNA102
BHOH334
BHOH475
BHOH515

site_idAF4
Number of Residues7
Detailsbinding site for residue NA B 102
ChainResidue
BU45
BNA101
BHOH260
BHOH279
BHOH474
BHOH475
BHOH514

site_idAF5
Number of Residues7
Detailsbinding site for residue CA B 103
ChainResidue
BHOH210
BHOH236
BHOH262
BHOH269
BHOH307
BHOH366
BHOH504

site_idAF6
Number of Residues6
Detailsbinding site for residue CA B 104
ChainResidue
AHOH2356
BU93
BHOH455
BHOH461
BHOH481
BHOH529

site_idAF7
Number of Residues6
Detailsbinding site for residue CA B 105
ChainResidue
BG74
BHOH283
BHOH343
BHOH390
BHOH399
BHOH501

site_idAF8
Number of Residues7
Detailsbinding site for residue CA B 106
ChainResidue
AHOH2322
BHOH211
BHOH255
BHOH344
BHOH357
BHOH422
BHOH531

site_idAF9
Number of Residues7
Detailsbinding site for residue CA B 107
ChainResidue
AHOH2021
AHOH2204
AHOH2385
BHOH222
BHOH361
BHOH485
BHOH513

site_idAG1
Number of Residues8
Detailsbinding site for residue CA B 108
ChainResidue
AHOH2351
AHOH2379
BG20
BHOH206
BHOH221
BHOH403
BHOH425
BHOH533

site_idAG2
Number of Residues5
Detailsbinding site for residue CA B 109
ChainResidue
BU12
BG13
BHOH204
BHOH502
CHOH123

site_idAG3
Number of Residues6
Detailsbinding site for residue EDO B 110
ChainResidue
ATYR1265
AEDO1722
BC42
BG43
BHOH258
BHOH300

site_idAG4
Number of Residues6
Detailsbinding site for residue EDO B 111
ChainResidue
AARG1404
AHOH2038
BG31
BC44
BU45
BHOH275

site_idAG5
Number of Residues5
Detailsbinding site for residue EDO B 112
ChainResidue
AARG59
AARG62
AHOH1931
BA61
BG62

site_idAG6
Number of Residues6
Detailsbinding site for residue EDO B 113
ChainResidue
ASER105
ATYR449
BU17
BHOH245
BHOH264
BHOH384

site_idAG7
Number of Residues7
Detailsbinding site for residue EDO B 114
ChainResidue
AGLY309
BG19
BG20
BHOH230
BHOH295
BHOH298
CHOH118

site_idAG8
Number of Residues7
Detailsbinding site for residue EDO B 115
ChainResidue
AARG369
BG73
BC89
BHOH243
BHOH244
BHOH308
BHOH391

site_idAG9
Number of Residues6
Detailsbinding site for residue EDO B 116
ChainResidue
ATYR1329
AEDO1722
BC34
BC35
BG41
BHOH300

site_idAH1
Number of Residues6
Detailsbinding site for residue EDO B 117
ChainResidue
AMET52
AARG55
BG69
BA70
BHOH248
BHOH394

site_idAH2
Number of Residues5
Detailsbinding site for residue EDO B 118
ChainResidue
BG28
BHOH202
BHOH260
BHOH279
BHOH475

site_idAH3
Number of Residues5
Detailsbinding site for residue EDO B 119
ChainResidue
BC32
BG33
BC34
BHOH281
BHOH310

site_idAH4
Number of Residues3
Detailsbinding site for residue EDO B 120
ChainResidue
BA71
BG94
BHOH223

site_idAH5
Number of Residues6
Detailsbinding site for residue EDO B 121
ChainResidue
AARG455
ALYS456
BA71
BC89
BHOH244
BHOH262

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: For RuvC-like nuclease domain => ECO:0000305|PubMed:26875867
ChainResidueDetails
AASP11

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton acceptor for HNH nuclease domain => ECO:0000305|PubMed:26875867
ChainResidueDetails
AALA995

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q99ZW2
ChainResidueDetails
AASP11
AASP876
AASN880
AHIS1162

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:17550600
ChainResidueDetails
ACYS460
ACYS657
ACYS814
ACYS817

site_idSWS_FT_FI5
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:26875867
ChainResidueDetails
AALA1556
AARG1585

225946

PDB entries from 2024-10-09

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