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5B2P

Crystal structure of Francisella novicida Cas9 in complex with sgRNA and target DNA (TGA PAM)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003723molecular_functionRNA binding
A0004519molecular_functionendonuclease activity
A0046872molecular_functionmetal ion binding
A0051607biological_processdefense response to virus
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 1701
ChainResidue
ACYS460
ACYS657
ACYS814
ACYS817

site_idAC2
Number of Residues6
Detailsbinding site for residue NA A 1702
ChainResidue
AHOH2368
APHE647
AASP649
AHOH2031
AHOH2189
AHOH2251

site_idAC3
Number of Residues6
Detailsbinding site for residue NA A 1703
ChainResidue
AHOH2374
BHOH232
BHOH301
BHOH442
BHOH529
BHOH537

site_idAC4
Number of Residues3
Detailsbinding site for residue CL A 1704
ChainResidue
ALYS564
APHE602
AHOH2268

site_idAC5
Number of Residues5
Detailsbinding site for residue CL A 1705
ChainResidue
ALYS366
ALYS370
ATRP395
AGLU399
AHOH2015

site_idAC6
Number of Residues5
Detailsbinding site for residue CA A 1706
ChainResidue
AASP11
AGLU903
AHIS1162
AHOH1839
AHOH1883

site_idAC7
Number of Residues7
Detailsbinding site for residue CA A 1707
ChainResidue
AASP66
AHOH2357
BA60
BHOH317
BHOH322
BHOH408
BHOH503

site_idAC8
Number of Residues7
Detailsbinding site for residue CA A 1708
ChainResidue
AHOH1808
AHOH1984
AHOH2401
AHOH2409
CHOH210
CHOH229
CHOH264

site_idAC9
Number of Residues8
Detailsbinding site for residue CA A 1709
ChainResidue
AASP66
AHOH1818
BHOH284
BHOH303
BHOH338
BHOH377
BHOH408
BHOH525

site_idAD1
Number of Residues6
Detailsbinding site for residue CA A 1710
ChainResidue
AVAL402
AHOH2319
AHOH2358
BU83
BHOH490
BHOH499

site_idAD2
Number of Residues6
Detailsbinding site for residue CA A 1711
ChainResidue
AHOH1880
AHOH1893
AHOH2439
BHOH296
BHOH325
BHOH496

site_idAD3
Number of Residues5
Detailsbinding site for residue CA A 1712
ChainResidue
ASER507
AHOH2367
AHOH2369
BHOH278
BHOH423

site_idAD4
Number of Residues5
Detailsbinding site for residue CA A 1713
ChainResidue
ALYS1415
AASP1417
AHOH2141
AHOH2379
AHOH2386

site_idAD5
Number of Residues7
Detailsbinding site for residue CA A 1714
ChainResidue
AHOH1846
AHOH2045
AHOH2078
AHOH2195
BHOH250
CHOH204
CHOH258

site_idAD6
Number of Residues4
Detailsbinding site for residue CA A 1715
ChainResidue
AGLU1231
AASN1234
AASP1498
ASER1499

site_idAD7
Number of Residues7
Detailsbinding site for residue CA A 1716
ChainResidue
AHOH2160
AHOH2293
AHOH2332
BHOH283
BHOH345
BHOH481
BHOH516

site_idAD8
Number of Residues6
Detailsbinding site for residue EDO A 1717
ChainResidue
ALYS45
ATYR48
ATHR49
ALEU50
ALEU51
AVAL911

site_idAD9
Number of Residues7
Detailsbinding site for residue EDO A 1718
ChainResidue
ATYR332
AASN335
APHE336
ATYR345
AHOH1951
AASP90
ATHR91

site_idAE1
Number of Residues6
Detailsbinding site for residue EDO A 1719
ChainResidue
AHIS394
ALEU397
AGLY398
AHOH1902
AHOH1942
AHOH2135

site_idAE2
Number of Residues8
Detailsbinding site for residue EDO A 1720
ChainResidue
ALEU626
ATYR627
AILE628
ATYR656
AARG1093
AGLU1097
AHOH2090
AHOH2136

site_idAE3
Number of Residues6
Detailsbinding site for residue EDO A 1721
ChainResidue
AARG625
ATYR627
ASER1118
APHE1119
AHOH1863
AHOH2101

site_idAE4
Number of Residues6
Detailsbinding site for residue EDO A 1722
ChainResidue
ALYS459
AGLY645
APHE647
AASN658
AHOH1835
AHOH2274

site_idAE5
Number of Residues7
Detailsbinding site for residue EDO A 1723
ChainResidue
APRO1251
ATYR1265
ATYR1329
AHOH1805
AHOH2085
BEDO109
BEDO115

site_idAE6
Number of Residues7
Detailsbinding site for residue EDO A 1724
ChainResidue
ASER105
AILE107
AASP406
APRO447
APRO448
AHOH1971
AHOH2077

site_idAE7
Number of Residues4
Detailsbinding site for residue EDO A 1725
ChainResidue
AGLN478
ATYR530
ALYS531
AASP534

site_idAE8
Number of Residues7
Detailsbinding site for residue EDO A 1726
ChainResidue
ALEU6
ASER21
AALA22
APHE23
AASN37
AASN877
AASN880

site_idAE9
Number of Residues4
Detailsbinding site for residue EDO A 1727
ChainResidue
ASER899
AALA901
APHE904
AASN1089

site_idAF1
Number of Residues8
Detailsbinding site for residue ACT A 1728
ChainResidue
AGLN92
ATHR1458
ATRP1459
AASP1460
AASN1462
AHOH1974
AHOH2222
BA50

site_idAF2
Number of Residues7
Detailsbinding site for residue NA B 101
ChainResidue
BG28
BU30
BU45
BNA102
BHOH288
BHOH510
BHOH519

site_idAF3
Number of Residues8
Detailsbinding site for residue NA B 102
ChainResidue
BU45
BNA101
BHOH262
BHOH475
BHOH510
BHOH514
BHOH539
BHOH541

site_idAF4
Number of Residues7
Detailsbinding site for residue CA B 103
ChainResidue
BHOH204
BHOH214
BHOH237
BHOH277
BHOH280
BHOH313
BHOH500

site_idAF5
Number of Residues7
Detailsbinding site for residue CA B 104
ChainResidue
AHOH2381
AHOH2419
BU93
BHOH224
BHOH416
BHOH430
BHOH534

site_idAF6
Number of Residues6
Detailsbinding site for residue CA B 105
ChainResidue
BG74
BHOH268
BHOH354
BHOH362
BHOH444
BHOH506

site_idAF7
Number of Residues6
Detailsbinding site for residue CA B 106
ChainResidue
AHOH1824
BHOH230
BHOH258
BHOH269
BHOH428
BHOH536

site_idAF8
Number of Residues8
Detailsbinding site for residue CA B 107
ChainResidue
AHOH2398
BG20
BHOH243
BHOH246
BHOH312
BHOH395
BHOH533
BHOH535

site_idAF9
Number of Residues5
Detailsbinding site for residue CA B 108
ChainResidue
BU12
BG13
BHOH205
BHOH472
CHOH224

site_idAG1
Number of Residues6
Detailsbinding site for residue EDO B 109
ChainResidue
ATYR1265
AEDO1723
BC42
BG43
BHOH233
BHOH257

site_idAG2
Number of Residues6
Detailsbinding site for residue EDO B 110
ChainResidue
AARG1404
AHOH2112
BG31
BC44
BU45
BHOH211

site_idAG3
Number of Residues5
Detailsbinding site for residue EDO B 111
ChainResidue
AARG59
AARG62
BA61
BG62
BHOH317

site_idAG4
Number of Residues6
Detailsbinding site for residue EDO B 112
ChainResidue
ASER105
ATYR449
BU17
BHOH248
BHOH302
BHOH350

site_idAG5
Number of Residues7
Detailsbinding site for residue EDO B 113
ChainResidue
AGLY309
BG19
BG20
BHOH215
BHOH221
BHOH227
CHOH218

site_idAG6
Number of Residues7
Detailsbinding site for residue EDO B 114
ChainResidue
AARG369
BG73
BC89
BHOH222
BHOH293
BHOH352
BHOH403

site_idAG7
Number of Residues6
Detailsbinding site for residue EDO B 115
ChainResidue
ATYR1329
AEDO1723
BC34
BC35
BG41
BHOH257

site_idAG8
Number of Residues7
Detailsbinding site for residue EDO B 116
ChainResidue
AMET52
AARG55
ALYS864
AHOH2317
BA64
BG69
BHOH279

site_idAG9
Number of Residues7
Detailsbinding site for residue EDO B 117
ChainResidue
AARG455
ALYS456
BA71
BC72
BC89
BHOH222
BHOH280

site_idAH1
Number of Residues3
Detailsbinding site for residue EDO B 118
ChainResidue
BA71
BG94
BHOH201

site_idAH2
Number of Residues6
Detailsbinding site for residue EDO B 119
ChainResidue
BC32
BG33
BC34
BHOH297
BHOH413
BHOH464

site_idAH3
Number of Residues8
Detailsbinding site for residue ACT B 120
ChainResidue
AASN1248
ASER1368
AARG1370
APHE1398
BC44
BHOH232
BHOH247
BHOH281

site_idAH4
Number of Residues5
Detailsbinding site for residue EDO C 101
ChainResidue
AASN1089
AGLY1090
CDC21
CDT22
CHOH208

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: For RuvC-like nuclease domain => ECO:0000305|PubMed:26875867
ChainResidueDetails
AASP11

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton acceptor for HNH nuclease domain => ECO:0000305|PubMed:26875867
ChainResidueDetails
AALA995

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q99ZW2
ChainResidueDetails
AASP11
AASP876
AASN880
AHIS1162

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:17550600
ChainResidueDetails
ACYS460
ACYS657
ACYS814
ACYS817

site_idSWS_FT_FI5
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:26875867
ChainResidueDetails
AARG1556
AARG1585

224572

PDB entries from 2024-09-04

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