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5B2O

Crystal structure of Francisella novicida Cas9 in complex with sgRNA and target DNA (TGG PAM)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003723molecular_functionRNA binding
A0004519molecular_functionendonuclease activity
A0046872molecular_functionmetal ion binding
A0051607biological_processdefense response to virus
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 1701
ChainResidue
ACYS460
ACYS657
ACYS814
ACYS817

site_idAC2
Number of Residues6
Detailsbinding site for residue NA A 1702
ChainResidue
AHOH2342
APHE647
AASP649
AHOH1916
AHOH2167
AHOH2247

site_idAC3
Number of Residues7
Detailsbinding site for residue NA A 1703
ChainResidue
AASN1248
AHOH2356
BACT120
BHOH278
BHOH314
BHOH518
BHOH526

site_idAC4
Number of Residues4
Detailsbinding site for residue CL A 1704
ChainResidue
ALYS564
APHE602
AHOH2229
AHOH2389

site_idAC5
Number of Residues4
Detailsbinding site for residue CL A 1705
ChainResidue
ALYS366
ALYS370
AGLU399
AHOH2098

site_idAC6
Number of Residues5
Detailsbinding site for residue CA A 1706
ChainResidue
AASP11
AGLU903
AHIS1162
AHOH1819
AHOH1857

site_idAC7
Number of Residues7
Detailsbinding site for residue CA A 1707
ChainResidue
AASP66
AHOH2340
BA60
BHOH244
BHOH299
BHOH444
BHOH484

site_idAC8
Number of Residues7
Detailsbinding site for residue CA A 1708
ChainResidue
AHOH1807
AHOH2074
AHOH2372
AHOH2402
CHOH204
CHOH230
CHOH264

site_idAC9
Number of Residues8
Detailsbinding site for residue CA A 1709
ChainResidue
AASP66
AHOH1809
AHOH2070
BHOH283
BHOH317
BHOH381
BHOH444
BHOH513

site_idAD1
Number of Residues5
Detailsbinding site for residue CA A 1710
ChainResidue
AVAL402
AHOH2335
BU83
BHOH282
BHOH495

site_idAD2
Number of Residues6
Detailsbinding site for residue CA A 1711
ChainResidue
AHOH1898
AHOH1919
BHOH219
BHOH228
BHOH487
BHOH530

site_idAD3
Number of Residues5
Detailsbinding site for residue CA A 1712
ChainResidue
ASER507
AHOH2320
AHOH2331
AHOH2347
BHOH386

site_idAD4
Number of Residues5
Detailsbinding site for residue CA A 1713
ChainResidue
ALYS1415
AASP1417
AHOH2081
AHOH2351
AHOH2368

site_idAD5
Number of Residues7
Detailsbinding site for residue CA A 1714
ChainResidue
AHOH2018
AHOH2089
AHOH2286
AHOH2352
BHOH388
CHOH206
CHOH260

site_idAD6
Number of Residues4
Detailsbinding site for residue CA A 1715
ChainResidue
AGLU1231
AASN1234
AASP1498
ASER1499

site_idAD7
Number of Residues7
Detailsbinding site for residue EDO A 1716
ChainResidue
ALYS45
ATYR48
ATHR49
ALEU50
ALEU51
AVAL911
AHOH2046

site_idAD8
Number of Residues6
Detailsbinding site for residue EDO A 1717
ChainResidue
AGLY309
AHOH1853
AHOH2082
BG19
BG20
CHOH215

site_idAD9
Number of Residues9
Detailsbinding site for residue EDO A 1718
ChainResidue
ATYR332
AASN335
APHE336
AASN339
ATYR345
AHOH1887
AHOH1996
AASP90
ATHR91

site_idAE1
Number of Residues6
Detailsbinding site for residue EDO A 1719
ChainResidue
AHIS394
ALEU397
AGLY398
AHOH1937
AHOH2125
BHOH411

site_idAE2
Number of Residues8
Detailsbinding site for residue EDO A 1720
ChainResidue
ALEU626
ATYR627
AILE628
ATYR656
AARG1093
AGLU1097
AHOH2076
AHOH2116

site_idAE3
Number of Residues7
Detailsbinding site for residue EDO A 1721
ChainResidue
AARG625
ALEU626
ATYR627
ASER1118
APHE1119
AHOH1907
AHOH2065

site_idAE4
Number of Residues6
Detailsbinding site for residue EDO A 1722
ChainResidue
ALYS459
AGLY645
APHE647
AASN658
AHOH1837
AHOH2244

site_idAE5
Number of Residues6
Detailsbinding site for residue EDO A 1723
ChainResidue
APRO1251
ATYR1265
ATYR1329
BEDO110
BEDO115
BHOH379

site_idAE6
Number of Residues7
Detailsbinding site for residue EDO A 1724
ChainResidue
ASER105
AILE107
AASP406
APRO447
APRO448
AHOH1953
AHOH2071

site_idAE7
Number of Residues6
Detailsbinding site for residue EDO A 1725
ChainResidue
ASER21
AALA22
APHE23
AASN37
AASN877
AASN880

site_idAE8
Number of Residues4
Detailsbinding site for residue EDO A 1726
ChainResidue
AGLN478
ATYR530
ALYS531
AASP534

site_idAE9
Number of Residues4
Detailsbinding site for residue EDO A 1727
ChainResidue
ASER899
AALA901
APHE904
AASN1089

site_idAF1
Number of Residues8
Detailsbinding site for residue ACT A 1728
ChainResidue
AGLN92
ATHR1458
ATRP1459
AASP1460
AASN1462
AHOH1964
AHOH2166
BA50

site_idAF2
Number of Residues7
Detailsbinding site for residue NA B 101
ChainResidue
BG28
BU30
BU45
BNA102
BHOH291
BHOH505
BHOH510

site_idAF3
Number of Residues8
Detailsbinding site for residue NA B 102
ChainResidue
BU45
BNA101
BHOH220
BHOH482
BHOH503
BHOH505
BHOH531
BHOH533

site_idAF4
Number of Residues6
Detailsbinding site for residue CA B 103
ChainResidue
BHOH211
BHOH238
BHOH247
BHOH249
BHOH273
BHOH294

site_idAF5
Number of Residues6
Detailsbinding site for residue CA B 104
ChainResidue
AHOH2358
AHOH2384
BU93
BHOH458
BHOH472
BHOH524

site_idAF6
Number of Residues6
Detailsbinding site for residue CA B 105
ChainResidue
BG74
BHOH306
BHOH324
BHOH342
BHOH369
BHOH501

site_idAF7
Number of Residues6
Detailsbinding site for residue CA B 106
ChainResidue
AHOH1803
BHOH234
BHOH255
BHOH271
BHOH405
BHOH528

site_idAF8
Number of Residues7
Detailsbinding site for residue CA B 107
ChainResidue
AHOH2060
AHOH2283
AHOH2415
BHOH239
BHOH350
BHOH377
BHOH497

site_idAF9
Number of Residues8
Detailsbinding site for residue CA B 108
ChainResidue
AHOH2395
BG20
BHOH240
BHOH248
BHOH353
BHOH365
BHOH527
BHOH529

site_idAG1
Number of Residues5
Detailsbinding site for residue CA B 109
ChainResidue
BU12
BG13
BHOH209
BHOH498
CHOH223

site_idAG2
Number of Residues6
Detailsbinding site for residue EDO B 110
ChainResidue
ATYR1265
AEDO1723
BC42
BG43
BHOH257
BHOH259

site_idAG3
Number of Residues6
Detailsbinding site for residue EDO B 111
ChainResidue
AARG1404
BG31
BC44
BU45
BHOH288
BHOH370

site_idAG4
Number of Residues5
Detailsbinding site for residue EDO B 112
ChainResidue
AARG59
AARG62
BA61
BG62
BHOH244

site_idAG5
Number of Residues6
Detailsbinding site for residue EDO B 113
ChainResidue
ASER105
ATYR449
BU17
BHOH222
BHOH360
BHOH384

site_idAG6
Number of Residues6
Detailsbinding site for residue EDO B 114
ChainResidue
AARG369
BG73
BC89
BHOH215
BHOH292
BHOH402

site_idAG7
Number of Residues7
Detailsbinding site for residue EDO B 115
ChainResidue
ATYR1329
AEDO1723
BC34
BC35
BG41
BC42
BHOH259

site_idAG8
Number of Residues7
Detailsbinding site for residue EDO B 116
ChainResidue
AMET52
AARG55
ALYS864
AHOH2330
BA64
BG69
BHOH269

site_idAG9
Number of Residues2
Detailsbinding site for residue EDO B 117
ChainResidue
BA71
BG94

site_idAH1
Number of Residues5
Detailsbinding site for residue EDO B 118
ChainResidue
BC32
BG33
BC34
BHOH289
BHOH481

site_idAH2
Number of Residues6
Detailsbinding site for residue EDO B 119
ChainResidue
AARG455
ALYS456
BA71
BC89
BHOH215
BHOH247

site_idAH3
Number of Residues9
Detailsbinding site for residue ACT B 120
ChainResidue
AASN1248
ASER1368
AARG1370
APHE1398
ANA1703
BC44
BHOH216
BHOH300
BHOH314

site_idAH4
Number of Residues3
Detailsbinding site for residue EDO C 101
ChainResidue
AGLY1090
CDC21
CDT22

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: For RuvC-like nuclease domain => ECO:0000305|PubMed:26875867
ChainResidueDetails
AASP11

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton acceptor for HNH nuclease domain => ECO:0000305|PubMed:26875867
ChainResidueDetails
AALA995

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q99ZW2
ChainResidueDetails
AASP876
AASN880
AHIS1162
AASP11

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:17550600
ChainResidueDetails
ACYS460
ACYS657
ACYS814
ACYS817

site_idSWS_FT_FI5
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:26875867
ChainResidueDetails
AARG1585
AARG1556

221051

PDB entries from 2024-06-12

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