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5B06

Lysozyme (denatured by NaOD and refolded)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003796molecular_functionlysozyme activity
A0003824molecular_functioncatalytic activity
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005615cellular_componentextracellular space
A0005737cellular_componentcytoplasm
A0005783cellular_componentendoplasmic reticulum
A0008152biological_processmetabolic process
A0016231molecular_functionbeta-N-acetylglucosaminidase activity
A0016787molecular_functionhydrolase activity
A0016798molecular_functionhydrolase activity, acting on glycosyl bonds
A0016998biological_processcell wall macromolecule catabolic process
A0031640biological_processkilling of cells of another organism
A0042742biological_processdefense response to bacterium
A0042802molecular_functionidentical protein binding
A0050829biological_processdefense response to Gram-negative bacterium
A0050830biological_processdefense response to Gram-positive bacterium
A0051672biological_processobsolete catabolism by organism of cell wall peptidoglycan in other organism
Functional Information from PDB Data
site_idAC1
Number of Residues9
Detailsbinding site for residue EDO A 2001
ChainResidue
AGLN57
AILE58
AASN59
ATRP63
AALA107
ATRP108
AHOH2114
AHOH2159
AHOH2175

site_idAC2
Number of Residues7
Detailsbinding site for residue EDO A 2002
ChainResidue
AARG21
AVAL99
ASER100
AASP101
AGLY102
AASN103
AGLY104

site_idAC3
Number of Residues4
Detailsbinding site for residue EDO A 2003
ChainResidue
AGLY4
AARG5
ACYS6
AGLU7

site_idAC4
Number of Residues5
Detailsbinding site for residue EDO A 2004
ChainResidue
AASN65
AASN74
AASN77
AILE78
APRO79

site_idAC5
Number of Residues7
Detailsbinding site for residue NA A 2005
ChainResidue
ATYR53
AGLY54
AILE55
ALEU56
AGLN57
AILE58
ASER91

site_idAC6
Number of Residues5
Detailsbinding site for residue NA A 2006
ChainResidue
AGLY54
AILE55
ALEU83
ASER91
AHOH2119

site_idAC7
Number of Residues4
Detailsbinding site for residue NA A 2007
ChainResidue
AASN65
AGLY67
AHOH2141
AHOH2229

site_idAC8
Number of Residues6
Detailsbinding site for residue NA A 2008
ChainResidue
AGLY49
ASER50
ATHR51
AASP66
AARG68
ATHR69

site_idAC9
Number of Residues5
Detailsbinding site for residue NA A 2009
ChainResidue
AARG21
ATYR23
AARG114
ACL2013
AHOH2140

site_idAD1
Number of Residues4
Detailsbinding site for residue NA A 2010
ChainResidue
AALA42
AASN44
AARG68
AHOH2138

site_idAD2
Number of Residues7
Detailsbinding site for residue NA A 2011
ChainResidue
ACYS64
AASN65
ASER72
AARG73
AHOH2101
AHOH2151
AHOH2186

site_idAD3
Number of Residues4
Detailsbinding site for residue NA A 2012
ChainResidue
AGLN41
ATHR43
ATYR53
AARG68

site_idAD4
Number of Residues3
Detailsbinding site for residue CL A 2013
ChainResidue
ATYR23
AASN113
ANA2009

site_idAD5
Number of Residues7
Detailsbinding site for residue CL A 2014
ChainResidue
AASN65
AGLY67
AARG68
ATHR69
ASER72
AHOH2151
AHOH2207

site_idAD6
Number of Residues4
Detailsbinding site for residue CL A 2015
ChainResidue
ASER24
AGLY26
AGLN121
AHOH2199

site_idAD7
Number of Residues1
Detailsbinding site for residue CL A 2016
ChainResidue
ALYS33

Functional Information from PROSITE/UniProt
site_idPS00128
Number of Residues19
DetailsGLYCOSYL_HYDROL_F22_1 Glycosyl hydrolases family 22 (GH22) domain signature. CnipCsaLlssDItasvnC
ChainResidueDetails
ACYS76-CYS94

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU35
AASP52

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING:
ChainResidueDetails
AASP101

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 203
ChainResidueDetails
AGLU35hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
AASN46
AASP48
ASER50
AASP52covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction
AASN59

218853

PDB entries from 2024-04-24

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