5APG
Structure of the SAM-dependent rRNA:acp-transferase Tsr3 from Vulcanisaeta distributa
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000455 | biological_process | enzyme-directed rRNA pseudouridine synthesis |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006364 | biological_process | rRNA processing |
| A | 0016740 | molecular_function | transferase activity |
| A | 0042254 | biological_process | ribosome biogenesis |
| A | 0106388 | molecular_function | 18S rRNA aminocarboxypropyltransferase activity |
| A | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
| B | 0000455 | biological_process | enzyme-directed rRNA pseudouridine synthesis |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006364 | biological_process | rRNA processing |
| B | 0016740 | molecular_function | transferase activity |
| B | 0042254 | biological_process | ribosome biogenesis |
| B | 0106388 | molecular_function | 18S rRNA aminocarboxypropyltransferase activity |
| B | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
| C | 0000455 | biological_process | enzyme-directed rRNA pseudouridine synthesis |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0006364 | biological_process | rRNA processing |
| C | 0016740 | molecular_function | transferase activity |
| C | 0042254 | biological_process | ribosome biogenesis |
| C | 0106388 | molecular_function | 18S rRNA aminocarboxypropyltransferase activity |
| C | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE EEM B 1185 |
| Chain | Residue |
| B | ASN18 |
| B | LEU93 |
| B | TYR108 |
| B | LEU110 |
| B | SER111 |
| B | THR112 |
| B | ALA115 |
| B | HOH2026 |
| B | HOH2067 |
| B | THR19 |
| B | LEU45 |
| B | PRO47 |
| B | ILE69 |
| B | ASP70 |
| B | CYS71 |
| B | TRP73 |
| B | HIS80 |
| site_id | AC2 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE EEM A 1185 |
| Chain | Residue |
| A | ASN18 |
| A | THR19 |
| A | LEU45 |
| A | PRO47 |
| A | LEU68 |
| A | ILE69 |
| A | ASP70 |
| A | CYS71 |
| A | TRP73 |
| A | HIS80 |
| A | LEU93 |
| A | TYR108 |
| A | LEU110 |
| A | SER111 |
| A | THR112 |
| A | ALA115 |
| A | HOH2067 |
| site_id | AC3 |
| Number of Residues | 18 |
| Details | BINDING SITE FOR RESIDUE EEM C 1185 |
| Chain | Residue |
| C | ASN18 |
| C | THR19 |
| C | LEU45 |
| C | PRO47 |
| C | LEU68 |
| C | ILE69 |
| C | ASP70 |
| C | CYS71 |
| C | TRP73 |
| C | HIS80 |
| C | LEU93 |
| C | TYR108 |
| C | LEU110 |
| C | SER111 |
| C | THR112 |
| C | ALA115 |
| C | HOH2028 |
| C | HOH2061 |
| site_id | AC4 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE MES A 1186 |
| Chain | Residue |
| A | GLU163 |
| A | GLY166 |
| A | VAL167 |
| A | ASP168 |
| A | HOH2172 |
| A | HOH2187 |
| C | LYS22 |
| C | LEU135 |
| C | TYR136 |
| C | LYS137 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MES B 1186 |
| Chain | Residue |
| B | LYS22 |
| B | LEU135 |
| B | TYR136 |
| B | LYS137 |
| B | HOH2142 |
| B | HOH2174 |
| site_id | AC6 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE MES A 1187 |
| Chain | Residue |
| A | LYS22 |
| A | LEU135 |
| A | TYR136 |
| A | LYS137 |
| B | ARG162 |
| B | GLU163 |
| B | GLY166 |
| B | VAL167 |
| B | ASP168 |
| B | HOH2163 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 15 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:27084949, ECO:0007744|PDB:5APG |
| Chain | Residue | Details |
| A | THR19 | |
| B | THR112 | |
| C | THR19 | |
| C | ILE69 | |
| C | LEU93 | |
| C | TYR108 | |
| C | THR112 | |
| A | ILE69 | |
| A | LEU93 | |
| A | TYR108 | |
| A | THR112 | |
| B | THR19 | |
| B | ILE69 | |
| B | LEU93 | |
| B | TYR108 |
