5AH5
Crystal structure of the ternary complex of Agrobacterium radiobacter K84 agnB2 LeuRS-tRNA-LeuAMS
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0002161 | molecular_function | aminoacyl-tRNA editing activity |
A | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
A | 0004823 | molecular_function | leucine-tRNA ligase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0006412 | biological_process | translation |
A | 0006418 | biological_process | tRNA aminoacylation for protein translation |
A | 0006429 | biological_process | leucyl-tRNA aminoacylation |
A | 0046872 | molecular_function | metal ion binding |
A | 0106074 | biological_process | aminoacyl-tRNA metabolism involved in translational fidelity |
B | 0000166 | molecular_function | nucleotide binding |
B | 0002161 | molecular_function | aminoacyl-tRNA editing activity |
B | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
B | 0004823 | molecular_function | leucine-tRNA ligase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0006412 | biological_process | translation |
B | 0006418 | biological_process | tRNA aminoacylation for protein translation |
B | 0006429 | biological_process | leucyl-tRNA aminoacylation |
B | 0046872 | molecular_function | metal ion binding |
B | 0106074 | biological_process | aminoacyl-tRNA metabolism involved in translational fidelity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN A 900 |
Chain | Residue |
A | CYS432 |
A | CYS435 |
A | CYS473 |
A | CYS476 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN B 900 |
Chain | Residue |
B | CYS432 |
B | CYS435 |
B | CYS473 |
B | CYS476 |
site_id | AC3 |
Number of Residues | 24 |
Details | BINDING SITE FOR RESIDUE LSS A 1818 |
Chain | Residue |
A | PHE39 |
A | PRO40 |
A | TYR41 |
A | HIS47 |
A | GLY49 |
A | HIS50 |
A | ASN53 |
A | TYR54 |
A | ASP78 |
A | SER493 |
A | TYR496 |
A | TYR523 |
A | GLY525 |
A | GLY526 |
A | GLU528 |
A | HIS529 |
A | HIS533 |
A | GLN562 |
A | GLY563 |
A | MET564 |
A | VAL565 |
A | HOH2034 |
A | HOH2231 |
A | MET38 |
site_id | AC4 |
Number of Residues | 25 |
Details | BINDING SITE FOR RESIDUE LSS B 1818 |
Chain | Residue |
B | MET38 |
B | PHE39 |
B | PRO40 |
B | TYR41 |
B | HIS47 |
B | GLY49 |
B | HIS50 |
B | ASN53 |
B | TYR54 |
B | ASP78 |
B | SER493 |
B | TYR496 |
B | TYR523 |
B | GLY525 |
B | GLY526 |
B | GLU528 |
B | HIS529 |
B | HIS533 |
B | GLN562 |
B | GLY563 |
B | MET564 |
B | VAL565 |
B | HOH2064 |
B | HOH2266 |
B | HOH2384 |
site_id | AC5 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE MN C 1077 |
Chain | Residue |
C | G1 |
site_id | AC6 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE MN D 1077 |
Chain | Residue |
D | G1 |
site_id | AC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 C 1078 |
Chain | Residue |
A | SER213 |
C | G5 |
C | G69 |
C | G70 |
C | HOH2086 |
C | HOH2089 |
site_id | AC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 D 1078 |
Chain | Residue |
B | SER213 |
D | G5 |
D | G69 |
D | G70 |
D | HOH2074 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 A 1819 |
Chain | Residue |
A | ARG766 |
A | THR767 |
A | MET768 |
A | THR769 |
A | HOH2302 |
site_id | BC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 B 1819 |
Chain | Residue |
B | LYS31 |
B | ARG67 |
B | TYR69 |
site_id | BC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 B 1820 |
Chain | Residue |
B | ARG766 |
B | THR767 |
B | MET768 |
B | THR769 |
B | HOH2366 |
Functional Information from PROSITE/UniProt
site_id | PS00178 |
Number of Residues | 12 |
Details | AA_TRNA_LIGASE_I Aminoacyl-transfer RNA synthetases class-I signature. PytSGhLHIGHV |
Chain | Residue | Details |
A | PRO40-VAL51 |