4ZVV
Lactate dehydrogenase A in complex with a trisubstituted piperidine-2,4-dione inhibitor GNE-140
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0004459 | molecular_function | L-lactate dehydrogenase activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005739 | cellular_component | mitochondrion |
| A | 0005829 | cellular_component | cytosol |
| A | 0006089 | biological_process | lactate metabolic process |
| A | 0006090 | biological_process | pyruvate metabolic process |
| A | 0006096 | biological_process | glycolytic process |
| A | 0016020 | cellular_component | membrane |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| A | 0019752 | biological_process | carboxylic acid metabolic process |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0045296 | molecular_function | cadherin binding |
| A | 0070062 | cellular_component | extracellular exosome |
| A | 1990204 | cellular_component | oxidoreductase complex |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0004459 | molecular_function | L-lactate dehydrogenase activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0005634 | cellular_component | nucleus |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005739 | cellular_component | mitochondrion |
| B | 0005829 | cellular_component | cytosol |
| B | 0006089 | biological_process | lactate metabolic process |
| B | 0006090 | biological_process | pyruvate metabolic process |
| B | 0006096 | biological_process | glycolytic process |
| B | 0016020 | cellular_component | membrane |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| B | 0019752 | biological_process | carboxylic acid metabolic process |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0045296 | molecular_function | cadherin binding |
| B | 0070062 | cellular_component | extracellular exosome |
| B | 1990204 | cellular_component | oxidoreductase complex |
| C | 0003824 | molecular_function | catalytic activity |
| C | 0004459 | molecular_function | L-lactate dehydrogenase activity |
| C | 0005515 | molecular_function | protein binding |
| C | 0005634 | cellular_component | nucleus |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005739 | cellular_component | mitochondrion |
| C | 0005829 | cellular_component | cytosol |
| C | 0006089 | biological_process | lactate metabolic process |
| C | 0006090 | biological_process | pyruvate metabolic process |
| C | 0006096 | biological_process | glycolytic process |
| C | 0016020 | cellular_component | membrane |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| C | 0019752 | biological_process | carboxylic acid metabolic process |
| C | 0042802 | molecular_function | identical protein binding |
| C | 0045296 | molecular_function | cadherin binding |
| C | 0070062 | cellular_component | extracellular exosome |
| C | 1990204 | cellular_component | oxidoreductase complex |
| D | 0003824 | molecular_function | catalytic activity |
| D | 0004459 | molecular_function | L-lactate dehydrogenase activity |
| D | 0005515 | molecular_function | protein binding |
| D | 0005634 | cellular_component | nucleus |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0005739 | cellular_component | mitochondrion |
| D | 0005829 | cellular_component | cytosol |
| D | 0006089 | biological_process | lactate metabolic process |
| D | 0006090 | biological_process | pyruvate metabolic process |
| D | 0006096 | biological_process | glycolytic process |
| D | 0016020 | cellular_component | membrane |
| D | 0016491 | molecular_function | oxidoreductase activity |
| D | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| D | 0019752 | biological_process | carboxylic acid metabolic process |
| D | 0042802 | molecular_function | identical protein binding |
| D | 0045296 | molecular_function | cadherin binding |
| D | 0070062 | cellular_component | extracellular exosome |
| D | 1990204 | cellular_component | oxidoreductase complex |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 22 |
| Details | binding site for residue NAD A 401 |
| Chain | Residue |
| A | GLY28 |
| A | ARG98 |
| A | ILE115 |
| A | VAL135 |
| A | ASN137 |
| A | LEU164 |
| A | HIS192 |
| A | ILE251 |
| A | GN0405 |
| A | HOH506 |
| A | HOH511 |
| A | ALA29 |
| A | HOH515 |
| A | HOH524 |
| A | HOH528 |
| A | VAL30 |
| A | ASP51 |
| A | VAL52 |
| A | ILE53 |
| A | THR94 |
| A | ALA95 |
| A | GLY96 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 402 |
| Chain | Residue |
| A | HIS185 |
| C | ARG170 |
| C | HIS185 |
| C | HOH561 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 A 403 |
| Chain | Residue |
| A | ARG170 |
| A | HIS185 |
| A | HOH508 |
| A | HOH529 |
| A | HOH549 |
| C | LEU182 |
| C | HIS185 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 404 |
| Chain | Residue |
| A | TRP147 |
| A | PRO153 |
| A | LYS154 |
| site_id | AC5 |
| Number of Residues | 12 |
| Details | binding site for residue GN0 A 405 |
| Chain | Residue |
| A | ASN137 |
| A | ASP165 |
| A | ARG168 |
| A | HIS192 |
| A | GLY193 |
| A | ASP194 |
| A | ALA237 |
| A | TYR238 |
| A | ILE241 |
| A | GLY245 |
| A | THR247 |
| A | NAD401 |
| site_id | AC6 |
| Number of Residues | 23 |
| Details | binding site for residue NAD B 401 |
| Chain | Residue |
| B | GLY28 |
| B | ALA29 |
| B | VAL30 |
| B | ASP51 |
| B | VAL52 |
| B | ILE53 |
| B | THR94 |
| B | ALA95 |
| B | GLY96 |
| B | ARG98 |
| B | ILE115 |
| B | ILE119 |
| B | VAL135 |
| B | ASN137 |
| B | LEU164 |
| B | HIS192 |
| B | ILE251 |
| B | GN0404 |
| B | HOH502 |
| B | HOH504 |
| B | HOH518 |
| B | HOH538 |
| B | HOH539 |
| site_id | AC7 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 B 402 |
| Chain | Residue |
| B | ARG170 |
| B | HIS185 |
| B | HOH536 |
| B | HOH546 |
| B | HOH562 |
| D | LEU182 |
| D | HIS185 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 B 403 |
| Chain | Residue |
| B | TRP147 |
| B | PRO153 |
| B | LYS154 |
| site_id | AC9 |
| Number of Residues | 13 |
| Details | binding site for residue GN0 B 404 |
| Chain | Residue |
| B | ARG98 |
| B | ASN137 |
| B | LEU164 |
| B | ASP165 |
| B | ARG168 |
| B | HIS192 |
| B | GLY193 |
| B | ALA237 |
| B | TYR238 |
| B | ILE241 |
| B | GLY245 |
| B | THR247 |
| B | NAD401 |
| site_id | AD1 |
| Number of Residues | 21 |
| Details | binding site for residue NAD C 401 |
| Chain | Residue |
| C | ILE53 |
| C | THR94 |
| C | ALA95 |
| C | GLY96 |
| C | ARG98 |
| C | ILE119 |
| C | VAL135 |
| C | ASN137 |
| C | HIS192 |
| C | THR247 |
| C | GN0403 |
| C | HOH507 |
| C | HOH511 |
| C | HOH520 |
| C | HOH526 |
| C | HOH557 |
| C | GLY28 |
| C | ALA29 |
| C | VAL30 |
| C | ASP51 |
| C | VAL52 |
| site_id | AD2 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 C 402 |
| Chain | Residue |
| C | TRP147 |
| C | PRO153 |
| C | LYS154 |
| C | HOH543 |
| site_id | AD3 |
| Number of Residues | 13 |
| Details | binding site for residue GN0 C 403 |
| Chain | Residue |
| C | ARG98 |
| C | ASN137 |
| C | LEU164 |
| C | ASP165 |
| C | ARG168 |
| C | HIS192 |
| C | GLY193 |
| C | ALA237 |
| C | TYR238 |
| C | ILE241 |
| C | THR247 |
| C | NAD401 |
| C | HOH573 |
| site_id | AD4 |
| Number of Residues | 23 |
| Details | binding site for residue NAD D 401 |
| Chain | Residue |
| D | GLY28 |
| D | ALA29 |
| D | VAL30 |
| D | ASP51 |
| D | VAL52 |
| D | ILE53 |
| D | THR94 |
| D | ALA95 |
| D | GLY96 |
| D | ILE115 |
| D | PHE118 |
| D | ILE119 |
| D | VAL135 |
| D | ASN137 |
| D | SER160 |
| D | HIS192 |
| D | THR247 |
| D | GN0403 |
| D | HOH510 |
| D | HOH522 |
| D | HOH529 |
| D | HOH534 |
| D | HOH538 |
| site_id | AD5 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 D 402 |
| Chain | Residue |
| B | LEU182 |
| B | HIS185 |
| D | ARG170 |
| D | HIS185 |
| D | HOH543 |
| D | HOH564 |
| site_id | AD6 |
| Number of Residues | 14 |
| Details | binding site for residue GN0 D 403 |
| Chain | Residue |
| D | GLN99 |
| D | ASN137 |
| D | ASP165 |
| D | ARG168 |
| D | HIS192 |
| D | GLY193 |
| D | ASP194 |
| D | ALA237 |
| D | TYR238 |
| D | ILE241 |
| D | GLY245 |
| D | THR247 |
| D | NAD401 |
| D | HOH541 |
Functional Information from PROSITE/UniProt
| site_id | PS00064 |
| Number of Residues | 7 |
| Details | L_LDH L-lactate dehydrogenase active site. LGEHGDS |
| Chain | Residue | Details |
| A | LEU189-SER195 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | ACT_SITE: Proton acceptor |
| Chain | Residue | Details |
| A | ASN163 | |
| B | ASN163 | |
| C | ASN163 | |
| D | ASN163 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:11276087 |
| Chain | Residue | Details |
| A | LEU69 | |
| B | LEU69 | |
| C | LEU69 | |
| D | LEU69 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 16 |
| Details | BINDING: |
| Chain | Residue | Details |
| A | ILE76 | |
| C | LEU108 | |
| C | VAL139 | |
| C | GLY218 | |
| D | ILE76 | |
| D | LEU108 | |
| D | VAL139 | |
| D | GLY218 | |
| A | LEU108 | |
| A | VAL139 | |
| A | GLY218 | |
| B | ILE76 | |
| B | LEU108 | |
| B | VAL139 | |
| B | GLY218 | |
| C | ILE76 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 4 |
| Details | MOD_RES: N6-acetyllysine; alternate => ECO:0007744|PubMed:19608861 |
| Chain | Residue | Details |
| A | VAL27 | |
| B | VAL27 | |
| C | VAL27 | |
| D | VAL27 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 8 |
| Details | MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861 |
| Chain | Residue | Details |
| A | ASP51 | |
| A | GLY96 | |
| B | ASP51 | |
| B | GLY96 | |
| C | ASP51 | |
| C | GLY96 | |
| D | ASP51 | |
| D | GLY96 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 8 |
| Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P06151 |
| Chain | Residue | Details |
| A | SER88 | |
| A | LEU288 | |
| B | SER88 | |
| B | LEU288 | |
| C | SER88 | |
| C | LEU288 | |
| D | SER88 | |
| D | LEU288 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 12 |
| Details | MOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P06151 |
| Chain | Residue | Details |
| A | ASP194 | |
| D | ASP194 | |
| D | GLY202 | |
| D | LEU213 | |
| A | GLY202 | |
| A | LEU213 | |
| B | ASP194 | |
| B | GLY202 | |
| B | LEU213 | |
| C | ASP194 | |
| C | GLY202 | |
| C | LEU213 |
| site_id | SWS_FT_FI8 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P06151 |
| Chain | Residue | Details |
| A | SER209 | |
| B | SER209 | |
| C | SER209 | |
| D | SER209 |
| site_id | SWS_FT_FI9 |
| Number of Residues | 8 |
| Details | MOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:P04642 |
| Chain | Residue | Details |
| A | LEU279 | |
| A | CYS292 | |
| B | LEU279 | |
| B | CYS292 | |
| C | LEU279 | |
| C | CYS292 | |
| D | LEU279 | |
| D | CYS292 |
| site_id | SWS_FT_FI10 |
| Number of Residues | 4 |
| Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569 |
| Chain | Residue | Details |
| A | TYR280 | |
| B | TYR280 | |
| C | TYR280 | |
| D | TYR280 |
| site_id | SWS_FT_FI11 |
| Number of Residues | 8 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:28112733 |
| Chain | Residue | Details |
| A | VAL27 | |
| B | VAL27 | |
| C | VAL27 | |
| D | VAL27 |
