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4YHZ

Crystal structure of 304M3-B Fab in complex with H3K4me3 peptide

Functional Information from PDB Data
site_idAC1
Number of Residues11
Detailsbinding site for residue GOL H 301
ChainResidue
HASP31
HHOH412
HHOH465
HTYR32
HGLN53
HPHE100
HPHE100
HVAL101
HVAL101
HARG102
HTRP106

site_idAC2
Number of Residues6
Detailsbinding site for residue GOL H 302
ChainResidue
HPHE104
HTRP106
HTRP106
HHOH454
PM3L4
PTHR6

site_idAC3
Number of Residues5
Detailsbinding site for residue GOL H 303
ChainResidue
HARG30
HASP73
HASN74
HALA75
HHOH457

site_idAC4
Number of Residues3
Detailsbinding site for residue GOL H 304
ChainResidue
HPHE27
HARG98
HHOH401

site_idAC5
Number of Residues2
Detailsbinding site for residue GOL H 305
ChainResidue
HARG16
HSER17

site_idAC6
Number of Residues7
Detailsbinding site for residue GOL L 301
ChainResidue
LGLN36
LARG38
LILE57
LPRO58
LPHE61
LGLY80
LASP81

site_idAC7
Number of Residues4
Detailsbinding site for residue GOL L 302
ChainResidue
LPRO58
LGLU59
LARG60
LARG76

site_idAC8
Number of Residues3
Detailsbinding site for residue SO4 L 303
ChainResidue
LGLY67
LASN68
LTHR69

site_idAC9
Number of Residues15
Detailsbinding site for Ligand residues M3L P 4 through GLN P 5 bound to THR P 3
ChainResidue
HTRP33
HASP50
HGLY103
HTRP106
HGOL302
HHOH427
LASP29
LTRP90
LTYR97
LHOH404
PTHR3
PTHR6
PTHR6
PALA7
PHOH102

Functional Information from PROSITE/UniProt
site_idPS00178
Number of Residues12
DetailsAA_TRNA_LIGASE_I Aminoacyl-transfer RNA synthetases class-I signature. PgqTArITCGGT
ChainResidueDetails
LPRO14-THR25

site_idPS00290
Number of Residues7
DetailsIG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YICNVNH
ChainResidueDetails
HTYR202-HIS208
LTYR193-HIS199

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsModified residue: {"description":"5-glutamyl serotonin; alternate","evidences":[{"source":"PubMed","id":"30867594","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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