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4YED

TcdA (CsdL)

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0008641molecular_functionubiquitin-like modifier activating enzyme activity
A0016020cellular_componentmembrane
A0016874molecular_functionligase activity
A0030955molecular_functionpotassium ion binding
A0031402molecular_functionsodium ion binding
A0042803molecular_functionprotein homodimerization activity
A0061503molecular_functiontRNA threonylcarbamoyladenosine dehydratase
A0061504biological_processcyclic threonylcarbamoyladenosine biosynthetic process
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0008641molecular_functionubiquitin-like modifier activating enzyme activity
B0016020cellular_componentmembrane
B0016874molecular_functionligase activity
B0030955molecular_functionpotassium ion binding
B0031402molecular_functionsodium ion binding
B0042803molecular_functionprotein homodimerization activity
B0061503molecular_functiontRNA threonylcarbamoyladenosine dehydratase
B0061504biological_processcyclic threonylcarbamoyladenosine biosynthetic process
C0005515molecular_functionprotein binding
C0005524molecular_functionATP binding
C0008641molecular_functionubiquitin-like modifier activating enzyme activity
C0016020cellular_componentmembrane
C0016874molecular_functionligase activity
C0030955molecular_functionpotassium ion binding
C0031402molecular_functionsodium ion binding
C0042803molecular_functionprotein homodimerization activity
C0061503molecular_functiontRNA threonylcarbamoyladenosine dehydratase
C0061504biological_processcyclic threonylcarbamoyladenosine biosynthetic process
D0005515molecular_functionprotein binding
D0005524molecular_functionATP binding
D0008641molecular_functionubiquitin-like modifier activating enzyme activity
D0016020cellular_componentmembrane
D0016874molecular_functionligase activity
D0030955molecular_functionpotassium ion binding
D0031402molecular_functionsodium ion binding
D0042803molecular_functionprotein homodimerization activity
D0061503molecular_functiontRNA threonylcarbamoyladenosine dehydratase
D0061504biological_processcyclic threonylcarbamoyladenosine biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues19
Detailsbinding site for residue AMP A 301
ChainResidue
AVAL36
ALYS85
APHE108
AVAL109
AILE129
AASP130
ASER131
APRO134
AHOH402
AHOH484
AHOH511
AGLY37
AGLY39
AGLY40
AILE60
AASP61
AASP63
AARG72
AGLN73

site_idAC2
Number of Residues9
Detailsbinding site for residue GOL A 302
ChainResidue
ACYS142
AILE147
APRO148
ALEU149
AGLY200
AVAL201
AASP202
AHOH405
AHOH462

site_idAC3
Number of Residues18
Detailsbinding site for residue AMP B 301
ChainResidue
BVAL36
BGLY37
BGLY39
BGLY40
BILE60
BASP61
BASP63
BARG72
BGLN73
BLYS85
BPHE108
BVAL109
BASP130
BSER131
BPRO134
BHOH418
BHOH478
BHOH485

site_idAC4
Number of Residues8
Detailsbinding site for residue GOL B 302
ChainResidue
BCYS142
BILE147
BPRO148
BLEU149
BGLY200
BVAL201
BASP202
BHOH456

site_idAC5
Number of Residues19
Detailsbinding site for residue AMP C 301
ChainResidue
ALYS196
CVAL36
CGLY37
CGLY39
CGLY40
CILE60
CASP61
CASP63
CARG72
CGLN73
CLYS85
CPHE108
CVAL109
CALA128
CASP130
CSER131
CPRO134
CHOH430
CHOH497

site_idAC6
Number of Residues8
Detailsbinding site for residue GOL C 302
ChainResidue
CCYS142
CILE147
CPRO148
CLEU149
CGLY200
CVAL201
CASP202
CHOH467

site_idAC7
Number of Residues17
Detailsbinding site for residue AMP D 301
ChainResidue
DVAL36
DGLY37
DGLY39
DGLY40
DILE60
DASP61
DASP63
DARG72
DGLN73
DLYS85
DPHE108
DVAL109
DALA128
DASP130
DPRO134
DHOH401
DHOH485

site_idAC8
Number of Residues8
Detailsbinding site for residue GOL D 302
ChainResidue
DILE147
DPRO148
DLEU149
DGLY200
DVAL201
DASP202
DHOH423
DCYS142

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues80
DetailsTRANSMEM: Helical => ECO:0000255
ChainResidueDetails
AGLY237-LEU257
BGLY237-LEU257
CGLY237-LEU257
DGLY237-LEU257

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PDB entries from 2024-07-17

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