4YE1
A cytochrome c plus calixarene structure - alternative ligand binding mode
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005515 | molecular_function | protein binding |
A | 0005739 | cellular_component | mitochondrion |
A | 0005758 | cellular_component | mitochondrial intermembrane space |
A | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
A | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
A | 0009055 | molecular_function | electron transfer activity |
A | 0020037 | molecular_function | heme binding |
A | 0046872 | molecular_function | metal ion binding |
A | 0070469 | cellular_component | respirasome |
A | 1901612 | molecular_function | cardiolipin binding |
B | 0005515 | molecular_function | protein binding |
B | 0005739 | cellular_component | mitochondrion |
B | 0005758 | cellular_component | mitochondrial intermembrane space |
B | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
B | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
B | 0009055 | molecular_function | electron transfer activity |
B | 0020037 | molecular_function | heme binding |
B | 0046872 | molecular_function | metal ion binding |
B | 0070469 | cellular_component | respirasome |
B | 1901612 | molecular_function | cardiolipin binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 26 |
Details | binding site for residue HEC A 201 |
Chain | Residue |
A | GLU13 |
A | TYR46 |
A | TYR48 |
A | THR49 |
A | ASN52 |
A | TRP59 |
A | MET64 |
A | TYR67 |
A | LEU68 |
A | THR78 |
A | LYS79 |
A | CYS14 |
A | MET80 |
A | LEU94 |
A | HOH402 |
A | HOH331 |
A | HOH324 |
A | HOH480 |
B | HOH533 |
A | CYS17 |
A | HIS18 |
A | VAL28 |
A | PRO30 |
A | ILE35 |
A | SER40 |
A | GLY41 |
site_id | AC2 |
Number of Residues | 26 |
Details | binding site for residue T3Y A 202 |
Chain | Residue |
A | LYS-2 |
A | SER2 |
A | ALA3 |
A | LYS4 |
A | LYS5 |
A | ALA7 |
A | LYS87 |
A | GLU88 |
A | LYS89 |
A | ASN92 |
A | TYR97 |
A | LYS100 |
A | HOH325 |
A | HOH338 |
A | HOH347 |
A | HOH353 |
A | HOH374 |
A | HOH386 |
A | HOH399 |
A | HOH412 |
A | HOH309 |
A | HOH378 |
A | HOH370 |
A | HOH326 |
A | HOH364 |
A | HOH380 |
site_id | AC3 |
Number of Residues | 24 |
Details | binding site for residue HEC B 201 |
Chain | Residue |
B | GLU13 |
B | CYS14 |
B | CYS17 |
B | HIS18 |
B | VAL28 |
B | PRO30 |
B | ILE35 |
B | SER40 |
B | GLY41 |
B | TYR46 |
B | TYR48 |
B | THR49 |
B | ASN52 |
B | TRP59 |
B | MET64 |
B | TYR67 |
B | LEU68 |
B | THR78 |
B | LYS79 |
B | MET80 |
B | ALA81 |
B | LEU94 |
B | HOH357 |
B | HOH440 |
site_id | AC4 |
Number of Residues | 26 |
Details | binding site for residue T3Y B 202 |
Chain | Residue |
B | HOH452 |
B | HOH378 |
B | HOH353 |
A | PRO25 |
A | HIS26 |
A | ALA51 |
A | LYS54 |
A | PRO76 |
A | GLY77 |
A | HOH323 |
A | HOH383 |
A | HOH391 |
B | SER2 |
B | ALA3 |
B | LYS4 |
B | ALA7 |
B | LYS73 |
B | PRO76 |
B | HOH301 |
B | HOH307 |
B | HOH310 |
B | HOH319 |
B | HOH325 |
B | HOH362 |
B | HOH386 |
B | HOH417 |
site_id | AC5 |
Number of Residues | 24 |
Details | binding site for residue T3Y B 203 |
Chain | Residue |
A | LYS11 |
A | LEU15 |
A | GLN16 |
A | LYS27 |
A | HOH335 |
B | LYS5 |
B | GLY23 |
B | PRO25 |
B | LYS87 |
B | LYS89 |
B | HOH319 |
B | HOH337 |
B | HOH342 |
B | HOH374 |
B | HOH385 |
B | HOH419 |
B | HOH433 |
B | HOH312 |
B | HOH320 |
B | HOH429 |
B | HOH403 |
B | HOH537 |
B | HOH410 |
B | HOH448 |
site_id | AC6 |
Number of Residues | 9 |
Details | binding site for residue GOL B 204 |
Chain | Residue |
A | GLU66 |
A | LYS73 |
A | TYR74 |
B | LYS55 |
B | ASN56 |
B | VAL57 |
B | TYR74 |
B | HOH363 |
B | HOH459 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | BINDING: covalent => ECO:0000269|PubMed:11880631, ECO:0000269|PubMed:18390544, ECO:0007744|PDB:1KYO, ECO:0007744|PDB:3CX5 |
Chain | Residue | Details |
A | CYS14 | |
A | CYS17 | |
B | CYS14 | |
B | CYS17 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | BINDING: axial binding residue => ECO:0000269|PubMed:11880631, ECO:0000269|PubMed:18390544, ECO:0007744|PDB:1KYO, ECO:0007744|PDB:3CX5 |
Chain | Residue | Details |
A | HIS18 | |
A | MET80 | |
B | HIS18 | |
B | MET80 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | MOD_RES: N6,N6,N6-trimethyllysine; by CTM1 => ECO:0000269|PubMed:10791961, ECO:0000269|PubMed:11880631, ECO:0007744|PDB:1KYO |
Chain | Residue | Details |
A | LYS72 | |
B | LYS72 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | MOD_RES: N6,N6,N6-trimethyllysine => ECO:0000269|PubMed:10821864, ECO:0000269|PubMed:18390544 |
Chain | Residue | Details |
A | LYS73 | |
B | LYS73 |