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4YCU

Crystal structure of cladosporin in complex with human lysyl-tRNA synthetase

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003676molecular_functionnucleic acid binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0004824molecular_functionlysine-tRNA ligase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006418biological_processtRNA aminoacylation for protein translation
A0006430biological_processlysyl-tRNA aminoacylation
B0000166molecular_functionnucleotide binding
B0003676molecular_functionnucleic acid binding
B0004812molecular_functionaminoacyl-tRNA ligase activity
B0004824molecular_functionlysine-tRNA ligase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0006418biological_processtRNA aminoacylation for protein translation
B0006430biological_processlysyl-tRNA aminoacylation
C0017101cellular_componentaminoacyl-tRNA synthetase multienzyme complex
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue KRS A 601
ChainResidue
AARG323
AARG553
ALYS602
AHOH757
AHOH863
AGLU325
AHIS331
AASN332
APHE335
ATHR337
AGLU494
AILE495
AGLY550

site_idAC2
Number of Residues12
Detailsbinding site for residue LYS A 602
ChainResidue
AGLY277
AGLU301
AARG323
AGLU339
ATYR341
AASN497
ATYR499
AGLU501
AGLY546
AGLY548
AKRS601
AHOH748

site_idAC3
Number of Residues10
Detailsbinding site for residue GOL A 603
ChainResidue
AARG131
AHIS133
AGLY149
AGLU150
AGLY151
AILE235
AARG241
AHOH803
AHOH872
AHOH919

site_idAC4
Number of Residues3
Detailsbinding site for residue GOL A 604
ChainResidue
AASP445
AGLU453
AGLU487

site_idAC5
Number of Residues14
Detailsbinding site for residue KRS B 601
ChainResidue
BARG323
BGLU325
BHIS331
BASN332
BPHE335
BTHR337
BGLU494
BILE495
BCYS496
BGLY550
BARG553
BLYS602
BHOH826
BHOH896

site_idAC6
Number of Residues11
Detailsbinding site for residue LYS B 602
ChainResidue
BGLY277
BGLU301
BARG323
BGLU339
BTYR341
BASN497
BTYR499
BGLU501
BGLY546
BKRS601
BHOH760

site_idAC7
Number of Residues7
Detailsbinding site for residue GOL B 603
ChainResidue
BTYR347
BMET351
BARG393
BASN395
BCYS463
BASP464
BHOH852

site_idAC8
Number of Residues5
Detailsbinding site for residue GOL B 604
ChainResidue
BASP445
BGLU453
BGLU487
BGLU494
BHOH739

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"18272479","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26074468","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues10
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"18272479","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23159739","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26074468","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues14
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"18272479","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues4
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"19524539","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

243083

PDB entries from 2025-10-15

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