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4YBM

Crystal structure of TRIM24 PHD-bromodomain complexed with N-{6-[3-(benzyloxy)phenoxy]-1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl}-3,4-dimethoxybenzene-1-sulfonamide (7b)

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 1101
ChainResidue
ACYS829
ACYS832
AHIS849
ACYS852

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 1102
ChainResidue
ACYS841
ACYS844
ACYS867
ACYS870

site_idAC3
Number of Residues6
Detailsbinding site for residue GOL A 1103
ChainResidue
AGLU978
APHE979
AASN980
AGLU981
AHOH1477
AALA977

site_idAC4
Number of Residues5
Detailsbinding site for residue GOL A 1104
ChainResidue
ATYR936
ALYS937
AILE938
AILE939
ALYS940

site_idAC5
Number of Residues18
Detailsbinding site for residue 4BJ B 1101
ChainResidue
ALEU922
AALA923
APHE924
AVAL928
APRO929
APHE979
AASN980
AGLU985
AHOH1325
AHOH1338
BTYR936
BTHR947
BARG951
BTYR956
BMET958
BHOH1286
BHOH1309
BHOH1379

site_idAC6
Number of Residues16
Detailsbinding site for residue 4BJ B 1102
ChainResidue
APRO927
ALEU930
ATYR936
BLEU922
BALA923
BVAL928
BPRO929
BVAL932
BPHE979
BASN980
BVAL986
BHOH1226
BHOH1232
BHOH1241
BHOH1271
BHOH1399

site_idAC7
Number of Residues3
Detailsbinding site for residue SO4 B 1103
ChainResidue
BARG970
BGLU998
BHOH1366

site_idAC8
Number of Residues4
Detailsbinding site for residue ZN B 1104
ChainResidue
BCYS829
BCYS832
BHIS849
BCYS852

site_idAC9
Number of Residues4
Detailsbinding site for residue ZN B 1105
ChainResidue
BCYS841
BCYS844
BCYS867
BCYS870

site_idAD1
Number of Residues4
Detailsbinding site for residue GOL B 1106
ChainResidue
BPRO902
BARG906
BHOH1234
BHOH1343

site_idAD2
Number of Residues4
Detailsbinding site for residue GOL B 1107
ChainResidue
BALA977
BGLU978
BPHE979
BASN980

site_idAD3
Number of Residues4
Detailsbinding site for residue SO4 B 1108
ChainResidue
BARG871
BASP872
BLEU873
BARG910

Functional Information from PROSITE/UniProt
site_idPS00633
Number of Residues62
DetailsBROMODOMAIN_1 Bromodomain signature. HemSlafqDpvpltvpDYYkiIknpMdlstIkkrlqedysmYskpedfvadfrl.IfqNCaeF
ChainResidueDetails
AHIS918-PHE979

site_idPS01359
Number of Residues42
DetailsZF_PHD_1 Zinc finger PHD-type signature. CavCqnggel.......................................LcCek..Cpkv.FHlsChvptltnfpsge.................................WiCtfC
ChainResidueDetails
ACYS829-CYS870

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues210
DetailsDomain: {"description":"Bromo","evidences":[{"source":"PROSITE-ProRule","id":"PRU00035","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues94
DetailsZinc finger: {"description":"PHD-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00146","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues12
DetailsRegion: {"description":"Interaction with histone H3 that is not methylated at 'Lys-4' (H3K4me0)"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsRegion: {"description":"Interaction with histone H3 that is acetylated at 'Lys-23' (H3K23ac)"}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsSite: {"description":"Interaction with histone H3 that is not methylated at 'Lys-4' (H3K4me0)"}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues6
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)","evidences":[{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues2
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)","evidences":[{"source":"PubMed","id":"25218447","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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