4YBM
Crystal structure of TRIM24 PHD-bromodomain complexed with N-{6-[3-(benzyloxy)phenoxy]-1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl}-3,4-dimethoxybenzene-1-sulfonamide (7b)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-09-25 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.1159 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 37.400, 79.820, 131.690 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.870 - 1.460 |
R-factor | 0.165 |
Rwork | 0.163 |
R-free | 0.19600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3o34 |
RMSD bond length | 0.027 |
RMSD bond angle | 2.189 |
Data scaling software | Aimless (0.1.27) |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 34.130 | 1.490 |
High resolution limit [Å] | 1.460 | 1.460 |
Rmerge | 0.075 | 1.155 |
Number of reflections | 68336 | |
<I/σ(I)> | 12.9 | 1.6 |
Completeness [%] | 99.2 | 100 |
Redundancy | 8.2 | 7.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 298 | 2.2-2.4M ammonium sulfate, 0.1M HEPES buffer pH 7.5, 2% PEG400 and 8-9% glycerol |