Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

4Y4Y

T=1 capsid structure of SeMV Ndel65CP fused with B-domain of S. aureus protein SpA at the N-terminus (C2 crystal form)

Functional Information from GO Data

Chain	GOid	namespace	contents
a	0005198	molecular_function	structural molecule activity
a	0019028	cellular_component	viral capsid
a	0019865	molecular_function	immunoglobulin binding
A	0005198	molecular_function	structural molecule activity
A	0019028	cellular_component	viral capsid
A	0019865	molecular_function	immunoglobulin binding
b	0005198	molecular_function	structural molecule activity
b	0019028	cellular_component	viral capsid
b	0019865	molecular_function	immunoglobulin binding
B	0005198	molecular_function	structural molecule activity
B	0019028	cellular_component	viral capsid
B	0019865	molecular_function	immunoglobulin binding
c	0005198	molecular_function	structural molecule activity
c	0019028	cellular_component	viral capsid
c	0019865	molecular_function	immunoglobulin binding
C	0005198	molecular_function	structural molecule activity
C	0019028	cellular_component	viral capsid
C	0019865	molecular_function	immunoglobulin binding
d	0005198	molecular_function	structural molecule activity
d	0019028	cellular_component	viral capsid
d	0019865	molecular_function	immunoglobulin binding
D	0005198	molecular_function	structural molecule activity
D	0019028	cellular_component	viral capsid
D	0019865	molecular_function	immunoglobulin binding
E	0005198	molecular_function	structural molecule activity
E	0019028	cellular_component	viral capsid
E	0019865	molecular_function	immunoglobulin binding
F	0005198	molecular_function	structural molecule activity
F	0019028	cellular_component	viral capsid
F	0019865	molecular_function	immunoglobulin binding
G	0005198	molecular_function	structural molecule activity
G	0019028	cellular_component	viral capsid
G	0019865	molecular_function	immunoglobulin binding
H	0005198	molecular_function	structural molecule activity
H	0019028	cellular_component	viral capsid
H	0019865	molecular_function	immunoglobulin binding
I	0005198	molecular_function	structural molecule activity
I	0019028	cellular_component	viral capsid
I	0019865	molecular_function	immunoglobulin binding
J	0005198	molecular_function	structural molecule activity
J	0019028	cellular_component	viral capsid
J	0019865	molecular_function	immunoglobulin binding
K	0005198	molecular_function	structural molecule activity
K	0019028	cellular_component	viral capsid
K	0019865	molecular_function	immunoglobulin binding
L	0005198	molecular_function	structural molecule activity
L	0019028	cellular_component	viral capsid
L	0019865	molecular_function	immunoglobulin binding
M	0005198	molecular_function	structural molecule activity
M	0019028	cellular_component	viral capsid
M	0019865	molecular_function	immunoglobulin binding
N	0005198	molecular_function	structural molecule activity
N	0019028	cellular_component	viral capsid
N	0019865	molecular_function	immunoglobulin binding
O	0005198	molecular_function	structural molecule activity
O	0019028	cellular_component	viral capsid
O	0019865	molecular_function	immunoglobulin binding
P	0005198	molecular_function	structural molecule activity
P	0019028	cellular_component	viral capsid
P	0019865	molecular_function	immunoglobulin binding
Q	0005198	molecular_function	structural molecule activity
Q	0019028	cellular_component	viral capsid
Q	0019865	molecular_function	immunoglobulin binding
R	0005198	molecular_function	structural molecule activity
R	0019028	cellular_component	viral capsid
R	0019865	molecular_function	immunoglobulin binding
S	0005198	molecular_function	structural molecule activity
S	0019028	cellular_component	viral capsid
S	0019865	molecular_function	immunoglobulin binding
T	0005198	molecular_function	structural molecule activity
T	0019028	cellular_component	viral capsid
T	0019865	molecular_function	immunoglobulin binding
U	0005198	molecular_function	structural molecule activity
U	0019028	cellular_component	viral capsid
U	0019865	molecular_function	immunoglobulin binding
V	0005198	molecular_function	structural molecule activity
V	0019028	cellular_component	viral capsid
V	0019865	molecular_function	immunoglobulin binding
W	0005198	molecular_function	structural molecule activity
W	0019028	cellular_component	viral capsid
W	0019865	molecular_function	immunoglobulin binding
X	0005198	molecular_function	structural molecule activity
X	0019028	cellular_component	viral capsid
X	0019865	molecular_function	immunoglobulin binding
Y	0005198	molecular_function	structural molecule activity
Y	0019028	cellular_component	viral capsid
Y	0019865	molecular_function	immunoglobulin binding
Z	0005198	molecular_function	structural molecule activity
Z	0019028	cellular_component	viral capsid
Z	0019865	molecular_function	immunoglobulin binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	10
Details	binding site for residue SO4 D 301

Chain	Residue
A	SER133
E	SER134
A	SER134
B	SER133
B	SER134
C	SER133
C	SER134
D	SER133
D	SER134
E	SER133

site_id	AC2
Number of Residues	9
Details	binding site for residue SO4 H 301

Chain	Residue
H	SER133
H	SER134
I	SER133
I	SER134
J	SER133
J	SER134
Z	SER133
a	SER133
a	SER134

site_id	AC3
Number of Residues	10
Details	binding site for residue SO4 L 301

Chain	Residue
K	SER133
K	SER134
L	SER133
L	SER134
X	SER133
X	SER134
Y	SER133
Y	SER134
b	SER133
b	SER134

site_id	AC4
Number of Residues	10
Details	binding site for residue SO4 M 301

Chain	Residue
M	SER133
M	SER134
N	SER133
N	SER134
T	SER133
T	SER134
U	SER133
U	SER134
c	SER133
c	SER134

site_id	AC5
Number of Residues	10
Details	binding site for residue SO4 S 301

Chain	Residue
O	SER133
O	SER134
P	SER133
P	SER134
Q	SER133
Q	SER134
S	SER133
S	SER134
d	SER133
d	SER134

site_id	AC6
Number of Residues	10
Details	binding site for residue SO4 V 301

Chain	Residue
F	SER133
F	SER134
G	SER133
G	SER134
R	SER133
R	SER134
V	SER133
V	SER134
W	SER133
W	SER134

Functional Information from PROSITE/UniProt

site_id	PS00555
Number of Residues	26
Details	ICOSAH_VIR_COAT_S Plant viruses icosahedral capsid proteins 'S' region signature. YiPscpsstaGsIhMgFqyDmadtvP

Chain	Residue	Details
A	TYR127-PRO152

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)