4Y1J

Lactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	binding site for residue GTP A 201

Chain	Residue
A	A3
A	C101
A	HOH303
B	C101
B	C102
B	GTP202

---

site_id	AC2
Number of Residues	7
Details	binding site for residue SR A 202

Chain	Residue
A	HOH367
A	HOH368
A	HOH369
A	HOH370
A	G8
A	HOH349
A	HOH366

---

site_id	AC3
Number of Residues	6
Details	binding site for residue SR A 203

Chain	Residue
A	G21
A	HOH333
A	HOH334
A	HOH381
A	HOH383
A	HOH384

---

site_id	AC4
Number of Residues	6
Details	binding site for residue SR A 204

Chain	Residue
A	G8
A	G9
A	A10
A	U39
A	C45
A	HOH372

---

site_id	AC5
Number of Residues	4
Details	binding site for residue SR A 206

Chain	Residue
A	G85
A	U86
A	SR211
A	SR224

---

site_id	AC6
Number of Residues	1
Details	binding site for residue SR A 207

Chain	Residue
A	C45

---

site_id	AC7
Number of Residues	7
Details	binding site for residue SR A 208

Chain	Residue
A	U68
A	HOH346
A	HOH355
A	HOH387
A	HOH396
A	HOH397
A	HOH398

---

site_id	AC8
Number of Residues	5
Details	binding site for residue SR A 209

Chain	Residue
A	G21
A	HOH333
A	HOH334
A	HOH337
A	HOH354

---

site_id	AC9
Number of Residues	6
Details	binding site for residue SR A 210

Chain	Residue
A	G9
A	U39
A	C40
A	U41
A	C45
A	HOH330

---

site_id	AD1
Number of Residues	1
Details	binding site for residue SR A 211

Chain	Residue
A	SR206

---

site_id	AD2
Number of Residues	2
Details	binding site for residue SR A 212

Chain	Residue
A	HOH364
A	HOH365

---

site_id	AD3
Number of Residues	1
Details	binding site for residue SR A 213

Chain	Residue
A	SR225

---

site_id	AD4
Number of Residues	3
Details	binding site for residue SR A 214

Chain	Residue
A	G35
A	U36
A	SR218

---

site_id	AD5
Number of Residues	1
Details	binding site for residue SR A 215

Chain	Residue
A	G70

---

site_id	AD6
Number of Residues	2
Details	binding site for residue SR A 216

Chain	Residue
A	G77
A	HOH301

---

site_id	AD7
Number of Residues	1
Details	binding site for residue SR A 217

Chain	Residue
A	HOH358

---

site_id	AD8
Number of Residues	5
Details	binding site for residue SR A 218

Chain	Residue
A	G35
A	U36
A	G61
A	G62
A	SR214

---

site_id	AD9
Number of Residues	1
Details	binding site for residue SR A 219

Chain	Residue
A	U88

---

site_id	AE1
Number of Residues	4
Details	binding site for residue SR A 220

Chain	Residue
A	A13
A	HOH360
A	HOH361
A	HOH419

---

site_id	AE2
Number of Residues	1
Details	binding site for residue SR A 221

Chain	Residue
A	A13

---

site_id	AE3
Number of Residues	2
Details	binding site for residue SR A 222

Chain	Residue
A	G51
A	MG238

---

site_id	AE4
Number of Residues	2
Details	binding site for residue SR A 223

Chain	Residue
A	G11
A	A92

---

site_id	AE5
Number of Residues	3
Details	binding site for residue SR A 224

Chain	Residue
A	U86
A	U87
A	SR206

---

site_id	AE6
Number of Residues	2
Details	binding site for residue SR A 225

Chain	Residue
A	SR213
A	HOH329

---

site_id	AE7
Number of Residues	1
Details	binding site for residue SR A 226

Chain	Residue
A	HOH417

---

site_id	AE8
Number of Residues	1
Details	binding site for residue SR A 227

Chain	Residue
A	U36

---

site_id	AE9
Number of Residues	1
Details	binding site for residue SR A 230

Chain	Residue
A	A71

---

site_id	AF1
Number of Residues	1
Details	binding site for residue SR A 231

Chain	Residue
A	A79

---

site_id	AF2
Number of Residues	1
Details	binding site for residue MG A 232

Chain	Residue
A	G19

---

site_id	AF3
Number of Residues	3
Details	binding site for residue MG A 233

Chain	Residue
A	U69
A	G70
A	U82

---

site_id	AF4
Number of Residues	2
Details	binding site for residue MG A 234

Chain	Residue
A	G94
A	A95

---

site_id	AF5
Number of Residues	2
Details	binding site for residue MG A 235

Chain	Residue
A	A93
A	G94

---

site_id	AF6
Number of Residues	3
Details	binding site for residue MG A 236

Chain	Residue
A	G9
A	A10
A	G11

---

site_id	AF7
Number of Residues	4
Details	binding site for residue MG A 237

Chain	Residue
A	U68
A	U69
B	G81
B	U82

---

site_id	AF8
Number of Residues	2
Details	binding site for residue MG A 238

Chain	Residue
A	SR222
A	G48

---

site_id	AF9
Number of Residues	1
Details	binding site for residue MG A 239

Chain	Residue
A	C91

---

site_id	AG1
Number of Residues	2
Details	binding site for residue MG A 240

Chain	Residue
A	C91
A	HOH375

---

site_id	AG2
Number of Residues	3
Details	binding site for residue MG A 241

Chain	Residue
A	G90
A	C91
B	U47

---

site_id	AG3
Number of Residues	5
Details	binding site for residue MG A 242

Chain	Residue
A	A10
A	G11
A	U12
A	G62
A	C63

---

site_id	AG4
Number of Residues	3
Details	binding site for residue MG A 243

Chain	Residue
A	C18
A	G19
A	HOH383

---

site_id	AG5
Number of Residues	3
Details	binding site for residue MG A 244

Chain	Residue
A	G19
A	A54
A	C72

---

site_id	AG6
Number of Residues	2
Details	binding site for residue MG A 245

Chain	Residue
A	G21
A	A24

---

site_id	AG7
Number of Residues	3
Details	binding site for residue MG A 246

Chain	Residue
A	U65
A	U66
A	HOH397

---

site_id	AG8
Number of Residues	2
Details	binding site for residue MG A 247

Chain	Residue
A	G77
A	A78

---

site_id	AG9
Number of Residues	4
Details	binding site for residue MG B 201

Chain	Residue
A	G81
A	U82
B	U68
B	U69

---

site_id	AH1
Number of Residues	6
Details	binding site for residue GTP B 202

Chain	Residue
A	C101
A	C102
A	GTP201
B	A3
B	C101
B	HOH302

---

site_id	AH2
Number of Residues	7
Details	binding site for residue SR B 203

Chain	Residue
B	U68
B	HOH322
B	HOH367
B	HOH368
B	HOH370
B	HOH376
B	HOH377

---

site_id	AH3
Number of Residues	1
Details	binding site for residue SR B 204

Chain	Residue
B	SR223

---

site_id	AH4
Number of Residues	7
Details	binding site for residue SR B 205

Chain	Residue
B	G21
B	HOH306
B	HOH334
B	HOH339
B	HOH382
B	HOH383
B	HOH384

---

site_id	AH5
Number of Residues	5
Details	binding site for residue SR B 206

Chain	Residue
B	G21
B	HOH318
B	HOH339
B	HOH356
B	HOH381

---

site_id	AH6
Number of Residues	5
Details	binding site for residue SR B 207

Chain	Residue
B	G8
B	HOH317
B	HOH332
B	HOH348
B	HOH352

---

site_id	AH7
Number of Residues	6
Details	binding site for residue SR B 208

Chain	Residue
B	G9
B	U39
B	C40
B	U41
B	C45
B	HOH353

---

site_id	AH8
Number of Residues	3
Details	binding site for residue SR B 209

Chain	Residue
B	HOH307
B	HOH316
B	HOH358

---

site_id	AH9
Number of Residues	3
Details	binding site for residue SR B 210

Chain	Residue
B	HOH332
B	HOH350
B	HOH351

---

site_id	AI1
Number of Residues	6
Details	binding site for residue SR B 211

Chain	Residue
B	G8
B	G9
B	A10
B	U39
B	C45
B	HOH324

---

site_id	AI2
Number of Residues	1
Details	binding site for residue SR B 212

Chain	Residue
B	G70

---

site_id	AI3
Number of Residues	4
Details	binding site for residue SR B 213

Chain	Residue
B	U12
B	A13
B	HOH362
B	HOH387

---

site_id	AI4
Number of Residues	1
Details	binding site for residue SR B 214

Chain	Residue
B	G51

---

site_id	AI5
Number of Residues	5
Details	binding site for residue SR B 215

Chain	Residue
B	G35
B	U36
B	G61
B	G62
B	SR219

---

site_id	AI6
Number of Residues	2
Details	binding site for residue SR B 216

Chain	Residue
B	G11
B	A92

---

site_id	AI7
Number of Residues	1
Details	binding site for residue SR B 217

Chain	Residue
B	U88

---

site_id	AI8
Number of Residues	3
Details	binding site for residue SR B 218

Chain	Residue
B	G77
B	HOH328
B	HOH385

---

site_id	AI9
Number of Residues	3
Details	binding site for residue SR B 219

Chain	Residue
B	G35
B	U36
B	SR215

---

site_id	AJ1
Number of Residues	3
Details	binding site for residue SR B 221

Chain	Residue
B	A29
B	U87
B	HOH376

---

site_id	AJ2
Number of Residues	1
Details	binding site for residue SR B 223

Chain	Residue
B	SR204

---

site_id	AJ3
Number of Residues	3
Details	binding site for residue SR B 224

Chain	Residue
B	G38
B	G46
B	C59

---

site_id	AJ4
Number of Residues	4
Details	binding site for residue MG B 226

Chain	Residue
B	G8
B	G9
B	C40
B	HOH354

---

site_id	AJ5
Number of Residues	2
Details	binding site for residue MG B 227

Chain	Residue
B	A73
B	U74

---

site_id	AJ6
Number of Residues	2
Details	binding site for residue MG B 228

Chain	Residue
B	C55
B	A73

---

site_id	AJ7
Number of Residues	2
Details	binding site for residue MG B 229

Chain	Residue
B	G8
B	A10

---

site_id	AJ8
Number of Residues	2
Details	binding site for residue MG B 230

Chain	Residue
B	U56
B	C57

---

site_id	AJ9
Number of Residues	1
Details	binding site for residue MG B 231

Chain	Residue
B	A95

---