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4XYJ

Crystal structure of human phosphofructokinase-1 in complex with ATP and Mg, Northeast Structural Genomics Consortium Target HR9275

Functional Information from GO Data
ChainGOidnamespacecontents
A0003872molecular_function6-phosphofructokinase activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005945cellular_component6-phosphofructokinase complex
A0006002biological_processfructose 6-phosphate metabolic process
A0006096biological_processglycolytic process
A0016020cellular_componentmembrane
A0016208molecular_functionAMP binding
A0016301molecular_functionkinase activity
A0030388biological_processfructose 1,6-bisphosphate metabolic process
A0042802molecular_functionidentical protein binding
A0044877molecular_functionprotein-containing complex binding
A0045296molecular_functioncadherin binding
A0046872molecular_functionmetal ion binding
A0048029molecular_functionmonosaccharide binding
A0061621biological_processcanonical glycolysis
A0070062cellular_componentextracellular exosome
A0070095molecular_functionfructose-6-phosphate binding
A1990830biological_processcellular response to leukemia inhibitory factor
B0003872molecular_function6-phosphofructokinase activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0005945cellular_component6-phosphofructokinase complex
B0006002biological_processfructose 6-phosphate metabolic process
B0006096biological_processglycolytic process
B0016020cellular_componentmembrane
B0016208molecular_functionAMP binding
B0016301molecular_functionkinase activity
B0030388biological_processfructose 1,6-bisphosphate metabolic process
B0042802molecular_functionidentical protein binding
B0044877molecular_functionprotein-containing complex binding
B0045296molecular_functioncadherin binding
B0046872molecular_functionmetal ion binding
B0048029molecular_functionmonosaccharide binding
B0061621biological_processcanonical glycolysis
B0070062cellular_componentextracellular exosome
B0070095molecular_functionfructose-6-phosphate binding
B1990830biological_processcellular response to leukemia inhibitory factor
C0003872molecular_function6-phosphofructokinase activity
C0005515molecular_functionprotein binding
C0005524molecular_functionATP binding
C0005634cellular_componentnucleus
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0005945cellular_component6-phosphofructokinase complex
C0006002biological_processfructose 6-phosphate metabolic process
C0006096biological_processglycolytic process
C0016020cellular_componentmembrane
C0016208molecular_functionAMP binding
C0016301molecular_functionkinase activity
C0030388biological_processfructose 1,6-bisphosphate metabolic process
C0042802molecular_functionidentical protein binding
C0044877molecular_functionprotein-containing complex binding
C0045296molecular_functioncadherin binding
C0046872molecular_functionmetal ion binding
C0048029molecular_functionmonosaccharide binding
C0061621biological_processcanonical glycolysis
C0070062cellular_componentextracellular exosome
C0070095molecular_functionfructose-6-phosphate binding
C1990830biological_processcellular response to leukemia inhibitory factor
D0003872molecular_function6-phosphofructokinase activity
D0005515molecular_functionprotein binding
D0005524molecular_functionATP binding
D0005634cellular_componentnucleus
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0005945cellular_component6-phosphofructokinase complex
D0006002biological_processfructose 6-phosphate metabolic process
D0006096biological_processglycolytic process
D0016020cellular_componentmembrane
D0016208molecular_functionAMP binding
D0016301molecular_functionkinase activity
D0030388biological_processfructose 1,6-bisphosphate metabolic process
D0042802molecular_functionidentical protein binding
D0044877molecular_functionprotein-containing complex binding
D0045296molecular_functioncadherin binding
D0046872molecular_functionmetal ion binding
D0048029molecular_functionmonosaccharide binding
D0061621biological_processcanonical glycolysis
D0070062cellular_componentextracellular exosome
D0070095molecular_functionfructose-6-phosphate binding
D1990830biological_processcellular response to leukemia inhibitory factor
E0003872molecular_function6-phosphofructokinase activity
E0005515molecular_functionprotein binding
E0005524molecular_functionATP binding
E0005634cellular_componentnucleus
E0005737cellular_componentcytoplasm
E0005829cellular_componentcytosol
E0005945cellular_component6-phosphofructokinase complex
E0006002biological_processfructose 6-phosphate metabolic process
E0006096biological_processglycolytic process
E0016020cellular_componentmembrane
E0016208molecular_functionAMP binding
E0016301molecular_functionkinase activity
E0030388biological_processfructose 1,6-bisphosphate metabolic process
E0042802molecular_functionidentical protein binding
E0044877molecular_functionprotein-containing complex binding
E0045296molecular_functioncadherin binding
E0046872molecular_functionmetal ion binding
E0048029molecular_functionmonosaccharide binding
E0061621biological_processcanonical glycolysis
E0070062cellular_componentextracellular exosome
E0070095molecular_functionfructose-6-phosphate binding
E1990830biological_processcellular response to leukemia inhibitory factor
F0003872molecular_function6-phosphofructokinase activity
F0005515molecular_functionprotein binding
F0005524molecular_functionATP binding
F0005634cellular_componentnucleus
F0005737cellular_componentcytoplasm
F0005829cellular_componentcytosol
F0005945cellular_component6-phosphofructokinase complex
F0006002biological_processfructose 6-phosphate metabolic process
F0006096biological_processglycolytic process
F0016020cellular_componentmembrane
F0016208molecular_functionAMP binding
F0016301molecular_functionkinase activity
F0030388biological_processfructose 1,6-bisphosphate metabolic process
F0042802molecular_functionidentical protein binding
F0044877molecular_functionprotein-containing complex binding
F0045296molecular_functioncadherin binding
F0046872molecular_functionmetal ion binding
F0048029molecular_functionmonosaccharide binding
F0061621biological_processcanonical glycolysis
F0070062cellular_componentextracellular exosome
F0070095molecular_functionfructose-6-phosphate binding
F1990830biological_processcellular response to leukemia inhibitory factor
G0003872molecular_function6-phosphofructokinase activity
G0005515molecular_functionprotein binding
G0005524molecular_functionATP binding
G0005634cellular_componentnucleus
G0005737cellular_componentcytoplasm
G0005829cellular_componentcytosol
G0005945cellular_component6-phosphofructokinase complex
G0006002biological_processfructose 6-phosphate metabolic process
G0006096biological_processglycolytic process
G0016020cellular_componentmembrane
G0016208molecular_functionAMP binding
G0016301molecular_functionkinase activity
G0030388biological_processfructose 1,6-bisphosphate metabolic process
G0042802molecular_functionidentical protein binding
G0044877molecular_functionprotein-containing complex binding
G0045296molecular_functioncadherin binding
G0046872molecular_functionmetal ion binding
G0048029molecular_functionmonosaccharide binding
G0061621biological_processcanonical glycolysis
G0070062cellular_componentextracellular exosome
G0070095molecular_functionfructose-6-phosphate binding
G1990830biological_processcellular response to leukemia inhibitory factor
H0003872molecular_function6-phosphofructokinase activity
H0005515molecular_functionprotein binding
H0005524molecular_functionATP binding
H0005634cellular_componentnucleus
H0005737cellular_componentcytoplasm
H0005829cellular_componentcytosol
H0005945cellular_component6-phosphofructokinase complex
H0006002biological_processfructose 6-phosphate metabolic process
H0006096biological_processglycolytic process
H0016020cellular_componentmembrane
H0016208molecular_functionAMP binding
H0016301molecular_functionkinase activity
H0030388biological_processfructose 1,6-bisphosphate metabolic process
H0042802molecular_functionidentical protein binding
H0044877molecular_functionprotein-containing complex binding
H0045296molecular_functioncadherin binding
H0046872molecular_functionmetal ion binding
H0048029molecular_functionmonosaccharide binding
H0061621biological_processcanonical glycolysis
H0070062cellular_componentextracellular exosome
H0070095molecular_functionfructose-6-phosphate binding
H1990830biological_processcellular response to leukemia inhibitory factor
Functional Information from PDB Data
site_idAC1
Number of Residues16
Detailsbinding site for residue ATP A 801
ChainResidue
AGLY33
ASER130
ATHR132
AGLY133
ASER173
AARG219
AMG802
AMG803
AGLY34
ATYR64
ACYS98
APHE101
AARG102
AGLY127
AASP128
AGLY129

site_idAC2
Number of Residues4
Detailsbinding site for residue MG A 802
ChainResidue
AASP128
AASP177
AARG219
AATP801

site_idAC3
Number of Residues5
Detailsbinding site for residue MG A 803
ChainResidue
ASER32
AGLY33
AGLY34
AGLY172
AATP801

site_idAC4
Number of Residues5
Detailsbinding site for residue PO4 A 804
ChainResidue
AGLY233
ALYS264
AARG430
AARG434
AGLY468

site_idAC5
Number of Residues4
Detailsbinding site for residue PO4 A 805
ChainResidue
AARG44
AARG48
ASER83
ASER84

site_idAC6
Number of Residues17
Detailsbinding site for residue ATP B 801
ChainResidue
BGLY33
BGLY34
BTYR64
BARG97
BCYS98
BPHE101
BARG102
BGLY127
BASP128
BGLY129
BSER130
BGLY133
BSER173
BASP175
BARG219
BMG802
BMG803

site_idAC7
Number of Residues4
Detailsbinding site for residue MG B 802
ChainResidue
BASP128
BASP177
BARG219
BATP801

site_idAC8
Number of Residues6
Detailsbinding site for residue MG B 803
ChainResidue
BSER32
BGLY34
BGLY126
BGLY127
BGLY172
BATP801

site_idAC9
Number of Residues6
Detailsbinding site for residue PO4 B 804
ChainResidue
BGLY233
BLYS264
BARG430
BARG434
BGLY468
BHOH902

site_idAD1
Number of Residues4
Detailsbinding site for residue PO4 B 805
ChainResidue
BARG44
BARG48
BSER83
BSER84

site_idAD2
Number of Residues2
Detailsbinding site for residue CO B 806
ChainResidue
BASP378
BHOH907

site_idAD3
Number of Residues20
Detailsbinding site for residue ATP C 801
ChainResidue
CSER32
CGLY33
CGLY34
CTYR64
CARG97
CCYS98
CPHE101
CARG102
CGLY127
CASP128
CGLY129
CSER130
CTHR132
CGLY133
CSER173
CASP175
CASP177
CARG219
CMG802
CMG803

site_idAD4
Number of Residues4
Detailsbinding site for residue MG C 802
ChainResidue
CASP128
CASP177
CARG219
CATP801

site_idAD5
Number of Residues7
Detailsbinding site for residue MG C 803
ChainResidue
CMET39
CGLY126
CGLY127
CGLY172
CATP801
CSER32
CGLY34

site_idAD6
Number of Residues7
Detailsbinding site for residue PO4 C 804
ChainResidue
CGLY233
CLYS264
CARG430
CARG434
CGLY467
CGLY468
CTHR470

site_idAD7
Number of Residues14
Detailsbinding site for residue ATP D 801
ChainResidue
DGLY34
DTYR64
DARG97
DCYS98
DPHE101
DGLY127
DASP128
DGLY129
DSER130
DGLY133
DSER173
DASP175
DARG219
DMG802

site_idAD8
Number of Residues4
Detailsbinding site for residue MG D 802
ChainResidue
DASP128
DASP177
DARG219
DATP801

site_idAD9
Number of Residues6
Detailsbinding site for residue PO4 D 803
ChainResidue
DGLY233
DLYS264
DARG430
DARG434
DGLY467
DGLY468

site_idAE1
Number of Residues19
Detailsbinding site for residue ATP E 801
ChainResidue
ESER32
EGLY33
EGLY34
ETYR64
EARG97
ECYS98
EPHE101
EARG102
EGLY127
EASP128
EGLY129
ESER130
ETHR132
EGLY133
ESER173
EASP175
EARG219
EMG802
EMG803

site_idAE2
Number of Residues3
Detailsbinding site for residue MG E 802
ChainResidue
EASP128
EASP177
EATP801

site_idAE3
Number of Residues6
Detailsbinding site for residue MG E 803
ChainResidue
ESER32
EGLY34
EGLY127
EGLY172
ESER173
EATP801

site_idAE4
Number of Residues6
Detailsbinding site for residue PO4 E 804
ChainResidue
EGLY233
ELYS264
EARG430
EARG434
EGLY467
EGLY468

site_idAE5
Number of Residues19
Detailsbinding site for residue ATP F 801
ChainResidue
FGLY33
FGLY34
FTYR64
FARG97
FCYS98
FPHE101
FARG102
FGLY127
FASP128
FGLY129
FSER130
FTHR132
FGLY133
FSER173
FASP175
FASP177
FARG219
FMG802
FMG803

site_idAE6
Number of Residues4
Detailsbinding site for residue MG F 802
ChainResidue
FASP128
FASP177
FARG219
FATP801

site_idAE7
Number of Residues5
Detailsbinding site for residue MG F 803
ChainResidue
FSER32
FGLY34
FGLY127
FGLY172
FATP801

site_idAE8
Number of Residues4
Detailsbinding site for residue PO4 F 804
ChainResidue
FARG44
FARG48
FSER83
FSER84

site_idAE9
Number of Residues6
Detailsbinding site for residue PO4 F 805
ChainResidue
FGLY233
FLYS264
FARG430
FARG434
FGLY467
FGLY468

site_idAF1
Number of Residues4
Detailsbinding site for residue CO F 806
ChainResidue
BHIS19
FGLU489
FLYS524
FHIS525

site_idAF2
Number of Residues19
Detailsbinding site for residue ATP G 801
ChainResidue
GSER32
GGLY33
GGLY34
GTYR64
GARG97
GCYS98
GPHE101
GARG102
GGLY127
GASP128
GGLY129
GSER130
GTHR132
GGLY133
GSER173
GASP175
GARG219
GMG802
GMG803

site_idAF3
Number of Residues4
Detailsbinding site for residue MG G 802
ChainResidue
GASP128
GASP177
GARG219
GATP801

site_idAF4
Number of Residues5
Detailsbinding site for residue MG G 803
ChainResidue
GSER32
GGLY34
GGLY127
GGLY172
GATP801

site_idAF5
Number of Residues6
Detailsbinding site for residue PO4 G 804
ChainResidue
GGLY233
GLYS264
GARG430
GARG434
GGLY467
GGLY468

site_idAF6
Number of Residues4
Detailsbinding site for residue PO4 G 805
ChainResidue
GARG44
GARG48
GSER83
GSER84

site_idAF7
Number of Residues17
Detailsbinding site for residue ATP H 801
ChainResidue
HGLY33
HGLY34
HTYR64
HARG97
HCYS98
HPHE101
HARG102
HGLY126
HGLY127
HASP128
HGLY129
HSER130
HSER173
HASP175
HARG219
HMG802
HMG803

site_idAF8
Number of Residues3
Detailsbinding site for residue MG H 802
ChainResidue
HASP128
HARG219
HATP801

site_idAF9
Number of Residues7
Detailsbinding site for residue MG H 803
ChainResidue
HSER32
HGLY34
HGLY126
HGLY127
HGLY172
HSER173
HATP801

site_idAG1
Number of Residues5
Detailsbinding site for residue PO4 H 804
ChainResidue
HGLY233
HARG430
HARG434
HGLY467
HGLY468

Functional Information from PROSITE/UniProt
site_idPS00433
Number of Residues19
DetailsPHOSPHOFRUCTOKINASE Phosphofructokinase signature. RvtilGHvQRGGtpsafDR
ChainResidueDetails
AARG301-ARG319
AARG665-ARG683

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_03184
ChainResidueDetails
AASP175
BASP175
CASP175
DASP175
EASP175
FASP175
GASP175
HASP175

site_idSWS_FT_FI2
Number of Residues64
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03184
ChainResidueDetails
AGLY34
BARG97
BGLY127
BASP128
BARG210
BARG301
BARG576
BARG665
CGLY34
CARG97
CGLY127
AARG97
CASP128
CARG210
CARG301
CARG576
CARG665
DGLY34
DARG97
DGLY127
DASP128
DARG210
AGLY127
DARG301
DARG576
DARG665
EGLY34
EARG97
EGLY127
EASP128
EARG210
EARG301
EARG576
AASP128
EARG665
FGLY34
FARG97
FGLY127
FASP128
FARG210
FARG301
FARG576
FARG665
GGLY34
AARG210
GARG97
GGLY127
GASP128
GARG210
GARG301
GARG576
GARG665
HGLY34
HARG97
HGLY127
AARG301
HASP128
HARG210
HARG301
HARG576
HARG665
AARG576
AARG665
BGLY34

site_idSWS_FT_FI3
Number of Residues80
DetailsBINDING: in other chain => ECO:0000255|HAMAP-Rule:MF_03184
ChainResidueDetails
ASER173
AARG744
BSER173
BMET217
BGLU273
BHIS307
BARG481
BTHR538
BMET583
BGLU639
BHIS671
AMET217
BARG744
CSER173
CMET217
CGLU273
CHIS307
CARG481
CTHR538
CMET583
CGLU639
CHIS671
AGLU273
CARG744
DSER173
DMET217
DGLU273
DHIS307
DARG481
DTHR538
DMET583
DGLU639
DHIS671
AHIS307
DARG744
ESER173
EMET217
EGLU273
EHIS307
EARG481
ETHR538
EMET583
EGLU639
EHIS671
AARG481
EARG744
FSER173
FMET217
FGLU273
FHIS307
FARG481
FTHR538
FMET583
FGLU639
FHIS671
ATHR538
FARG744
GSER173
GMET217
GGLU273
GHIS307
GARG481
GTHR538
GMET583
GGLU639
GHIS671
AMET583
GARG744
HSER173
HMET217
HGLU273
HHIS307
HARG481
HTHR538
HMET583
HGLU639
HHIS671
AGLU639
HARG744
AHIS671

site_idSWS_FT_FI4
Number of Residues8
DetailsMOD_RES: N-acetylmethionine => ECO:0007744|PubMed:19413330
ChainResidueDetails
AMET1
BMET1
CMET1
DMET1
EMET1
FMET1
GMET1
HMET1

site_idSWS_FT_FI5
Number of Residues16
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER6
ESER21
FSER6
FSER21
GSER6
GSER21
HSER6
HSER21
ASER21
BSER6
BSER21
CSER6
CSER21
DSER6
DSER21
ESER6

site_idSWS_FT_FI6
Number of Residues8
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P47859
ChainResidueDetails
ASER12
BSER12
CSER12
DSER12
ESER12
FSER12
GSER12
HSER12

site_idSWS_FT_FI7
Number of Residues8
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P47860
ChainResidueDetails
ASER142
BSER142
CSER142
DSER142
ESER142
FSER142
GSER142
HSER142

site_idSWS_FT_FI8
Number of Residues8
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:33607258, ECO:0007744|PubMed:16964243, ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:18691976, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER386
BSER386
CSER386
DSER386
ESER386
FSER386
GSER386
HSER386

site_idSWS_FT_FI9
Number of Residues24
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
ALYS395
DLYS395
DLYS486
DLYS688
ELYS395
ELYS486
ELYS688
FLYS395
FLYS486
FLYS688
GLYS395
ALYS486
GLYS486
GLYS688
HLYS395
HLYS486
HLYS688
ALYS688
BLYS395
BLYS486
BLYS688
CLYS395
CLYS486
CLYS688

site_idSWS_FT_FI10
Number of Residues8
DetailsMOD_RES: Phosphotyrosine => ECO:0007744|PubMed:15592455
ChainResidueDetails
ATYR651
BTYR651
CTYR651
DTYR651
ETYR651
FTYR651
GTYR651
HTYR651

site_idSWS_FT_FI11
Number of Residues8
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:18691976, ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:20068231
ChainResidueDetails
ASER783
BSER783
CSER783
DSER783
ESER783
FSER783
GSER783
HSER783

site_idSWS_FT_FI12
Number of Residues8
DetailsCARBOHYD: O-linked (GlcNAc) serine => ECO:0000250
ChainResidueDetails
ASER540
BSER540
CSER540
DSER540
ESER540
FSER540
GSER540
HSER540

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PDB entries from 2024-07-24

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