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4XX0

CoA bound to pig GTP-specific succinyl-CoA synthetase

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
B0003824molecular_functioncatalytic activity
B0004775molecular_functionsuccinate-CoA ligase (ADP-forming) activity
B0004776molecular_functionsuccinate-CoA ligase (GDP-forming) activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005525molecular_functionGTP binding
B0005737cellular_componentcytoplasm
B0005739cellular_componentmitochondrion
B0006099biological_processtricarboxylic acid cycle
B0006104biological_processsuccinyl-CoA metabolic process
B0016874molecular_functionligase activity
B0042709cellular_componentsuccinate-CoA ligase complex
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues24
Detailsbinding site for residue COA A 401
ChainResidue
AGLY22
AVAL80
APRO81
APRO82
AILE103
ATHR104
AGLU105
AASN131
ACYS132
APRO133
AHOH502
ATHR24
AHOH506
AHOH528
AHOH537
AHOH543
AHOH592
AGLY25
ALYS26
AGLN27
ATHR46
APRO48
ALYS50
ATYR79

site_idAC2
Number of Residues8
Detailsbinding site for residue PO4 A 402
ChainResidue
ASER162
AGLY163
ATHR164
AHIS259
AHOH587
BGLY272
BALA273
BGLY274

site_idAC3
Number of Residues4
Detailsbinding site for residue SO4 A 403
ChainResidue
AGLN122
AGLY123
ALYS124
AHOH596

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 A 404
ChainResidue
AARG255
AARG256
BLYS258

site_idAC5
Number of Residues3
Detailsbinding site for residue SO4 A 405
ChainResidue
AHIS55
ALEU56
AHOH553

site_idAC6
Number of Residues9
Detailsbinding site for residue GOL A 406
ChainResidue
ALYS116
AASN192
AGLY193
AASP195
AASP198
AHOH539
AHOH578
AHOH581
AHOH601

site_idAC7
Number of Residues4
Detailsbinding site for residue SO4 B 401
ChainResidue
AARG155
BTHR70
BLYS71
BASP72

site_idAC8
Number of Residues5
Detailsbinding site for residue SO4 B 402
ChainResidue
AARG256
BMET1
BASN224
BPHE225
BHOH583

site_idAC9
Number of Residues4
Detailsbinding site for residue SO4 B 403
ChainResidue
BGLY52
BGLY53
BARG54
BHOH589

site_idAD1
Number of Residues6
Detailsbinding site for residue GOL B 404
ChainResidue
BGLY77
BGLN78
BLYS81
BHOH503
BHOH510
BHOH513

site_idAD2
Number of Residues3
Detailsbinding site for residue GOL B 405
ChainResidue
BLYS163
BASP164
BSER165

Functional Information from PROSITE/UniProt
site_idPS00399
Number of Residues14
DetailsSUCCINYL_COA_LIG_2 ATP-citrate lyase / succinyl-CoA ligases family active site. GltAppgr...RMGHAG
ChainResidueDetails
AGLY248-GLY261

site_idPS01216
Number of Residues30
DetailsSUCCINYL_COA_LIG_1 ATP-citrate lyase / succinyl-CoA ligases family signature 1. SRSGTLTyEavhqttqvglGqslcVGIGGD
ChainResidueDetails
ASER160-ASP189

site_idPS01217
Number of Residues26
DetailsSUCCINYL_COA_LIG_3 ATP-citrate lyase / succinyl-CoA ligases family signature 3. GnIacFvNGAGLAmatcDiIflngGK
ChainResidueDetails
BGLY264-LYS289

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03221, ECO:0000269|PubMed:16481318
ChainResidueDetails
BGLN20
BGLY53
BLEU109

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03221, ECO:0000305|PubMed:16481318
ChainResidueDetails
BASN206
BASP220
AILE103

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03221, ECO:0000269|PubMed:27487822
ChainResidueDetails
BASN271
BGLY328

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: Important for substrate specificity => ECO:0000255|HAMAP-Rule:MF_03221
ChainResidueDetails
BGLU42
BASP110

site_idSWS_FT_FI5
Number of Residues8
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:Q9Z2I8
ChainResidueDetails
BLYS36
BLYS95
BLYS102
BLYS163
BLYS234
BLYS310
BLYS349
BLYS386

site_idSWS_FT_FI6
Number of Residues2
DetailsMOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:Q9Z2I8
ChainResidueDetails
BLYS41
BLYS301

site_idSWS_FT_FI7
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q9Z2I8
ChainResidueDetails
BSER124

site_idSWS_FT_FI8
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:Q96I99
ChainResidueDetails
BLYS190
BLYS254

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PDB entries from 2024-07-24

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