4XSD
Complex structure of thymidylate synthase from varicella zoster virus with a dUMP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004799 | molecular_function | thymidylate synthase activity |
| A | 0005829 | cellular_component | cytosol |
| A | 0006231 | biological_process | dTMP biosynthetic process |
| A | 0006235 | biological_process | dTTP biosynthetic process |
| A | 0008168 | molecular_function | methyltransferase activity |
| A | 0009165 | biological_process | nucleotide biosynthetic process |
| A | 0016741 | molecular_function | transferase activity, transferring one-carbon groups |
| A | 0032259 | biological_process | methylation |
| B | 0004799 | molecular_function | thymidylate synthase activity |
| B | 0005829 | cellular_component | cytosol |
| B | 0006231 | biological_process | dTMP biosynthetic process |
| B | 0006235 | biological_process | dTTP biosynthetic process |
| B | 0008168 | molecular_function | methyltransferase activity |
| B | 0009165 | biological_process | nucleotide biosynthetic process |
| B | 0016741 | molecular_function | transferase activity, transferring one-carbon groups |
| B | 0032259 | biological_process | methylation |
| C | 0004799 | molecular_function | thymidylate synthase activity |
| C | 0005829 | cellular_component | cytosol |
| C | 0006231 | biological_process | dTMP biosynthetic process |
| C | 0006235 | biological_process | dTTP biosynthetic process |
| C | 0008168 | molecular_function | methyltransferase activity |
| C | 0009165 | biological_process | nucleotide biosynthetic process |
| C | 0016741 | molecular_function | transferase activity, transferring one-carbon groups |
| C | 0032259 | biological_process | methylation |
| D | 0004799 | molecular_function | thymidylate synthase activity |
| D | 0005829 | cellular_component | cytosol |
| D | 0006231 | biological_process | dTMP biosynthetic process |
| D | 0006235 | biological_process | dTTP biosynthetic process |
| D | 0008168 | molecular_function | methyltransferase activity |
| D | 0009165 | biological_process | nucleotide biosynthetic process |
| D | 0016741 | molecular_function | transferase activity, transferring one-carbon groups |
| D | 0032259 | biological_process | methylation |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 14 |
| Details | binding site for residue UMP A 1001 |
| Chain | Residue |
| A | ARG38 |
| A | ASN214 |
| A | HIS244 |
| A | TYR246 |
| B | ARG163 |
| B | ARG164 |
| A | CYS183 |
| A | HIS184 |
| A | GLN202 |
| A | ARG203 |
| A | SER204 |
| A | GLY205 |
| A | ASP206 |
| A | GLY210 |
| site_id | AC2 |
| Number of Residues | 11 |
| Details | binding site for residue UMP B 1001 |
| Chain | Residue |
| A | ARG163 |
| A | ARG164 |
| B | CYS183 |
| B | GLN202 |
| B | ARG203 |
| B | GLY205 |
| B | ASP206 |
| B | ASN214 |
| B | HIS244 |
| B | TYR246 |
| B | HOH1101 |
| site_id | AC3 |
| Number of Residues | 11 |
| Details | binding site for residue UMP C 1001 |
| Chain | Residue |
| C | ARG38 |
| C | CYS183 |
| C | ARG203 |
| C | GLY205 |
| C | ASP206 |
| C | GLY210 |
| C | VAL211 |
| C | ASN214 |
| C | TYR246 |
| D | ARG163 |
| D | ARG164 |
| site_id | AC4 |
| Number of Residues | 12 |
| Details | binding site for residue UMP D 1001 |
| Chain | Residue |
| C | ARG163 |
| C | ARG164 |
| D | CYS183 |
| D | HIS184 |
| D | GLN202 |
| D | ARG203 |
| D | SER204 |
| D | GLY205 |
| D | ASP206 |
| D | ASN214 |
| D | HIS244 |
| D | TYR246 |
Functional Information from PROSITE/UniProt
| site_id | PS00091 |
| Number of Residues | 29 |
| Details | THYMIDYLATE_SYNTHASE Thymidylate synthase active site. RrmIissWNpkdiplmv.....LpPCHtlcQFyV |
| Chain | Residue | Details |
| A | ARG163-VAL191 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | ACT_SITE: Nucleophile => ECO:0000250|UniProtKB:P0A884 |
| Chain | Residue | Details |
| A | CYS183 | |
| B | CYS183 | |
| C | CYS183 | |
| D | CYS183 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 16 |
| Details | BINDING: in other chain => ECO:0000250|UniProtKB:P0A884 |
| Chain | Residue | Details |
| A | ARG38 | |
| C | ARG203 | |
| C | ASN214 | |
| C | HIS244 | |
| D | ARG38 | |
| D | ARG203 | |
| D | ASN214 | |
| D | HIS244 | |
| A | ARG203 | |
| A | ASN214 | |
| A | HIS244 | |
| B | ARG38 | |
| B | ARG203 | |
| B | ASN214 | |
| B | HIS244 | |
| C | ARG38 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 8 |
| Details | BINDING: BINDING => ECO:0000250|UniProtKB:P0A884 |
| Chain | Residue | Details |
| A | ARG163 | |
| A | ASP206 | |
| B | ARG163 | |
| B | ASP206 | |
| C | ARG163 | |
| C | ASP206 | |
| D | ARG163 | |
| D | ASP206 |
