4XRU

Structure of Pnkp1/Rnl/Hen1 complex

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0047846	molecular_function	deoxynucleotide 3'-phosphatase activity
C	0001510	biological_process	RNA methylation
C	0008171	molecular_function	O-methyltransferase activity
C	0008173	molecular_function	RNA methyltransferase activity
D	0047846	molecular_function	deoxynucleotide 3'-phosphatase activity
F	0001510	biological_process	RNA methylation
F	0008171	molecular_function	O-methyltransferase activity
F	0008173	molecular_function	RNA methyltransferase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	binding site for residue MG A 401

Chain	Residue
A	ASP183
A	ASP185
A	ASP288
A	HOH506

---

site_id	AC2
Number of Residues	12
Details	binding site for residue ATP A 402

Chain	Residue
A	LYS24
A	SER25
A	THR26
A	THR87
A	ARG122
B	ASN370
B	GLU372
A	ALA19
A	PRO20
A	GLY21
A	SER22
A	GLY23

---

site_id	AC3
Number of Residues	19
Details	binding site for residue ATP B 501

Chain	Residue
B	THR25
B	ILE26
B	GLU59
B	LYS60
B	LYS61
B	TYR62
B	TYR66
B	ARG83
B	GLU120
B	PHE234
B	GLU294
B	LYS299
B	LYS313
B	ARG315
B	LYS344
B	LEU394
B	MG505
B	HOH608
B	HOH620

---

site_id	AC4
Number of Residues	4
Details	binding site for residue MES B 502

Chain	Residue
B	SER32
B	VAL33
B	GLU34
B	GLU43

---

site_id	AC5
Number of Residues	4
Details	binding site for residue GOL B 503

Chain	Residue
B	GLU39
B	ARG315
B	ASN317
B	HOH618

---

site_id	AC6
Number of Residues	6
Details	binding site for residue GOL B 504

Chain	Residue
B	THR78
B	ILE88
B	ASN89
B	LEU91
B	GLN93
B	LEU97

---

site_id	AC7
Number of Residues	5
Details	binding site for residue MG B 505

Chain	Residue
B	GLY64
B	GLU120
B	ATP501
B	HOH606
B	HOH608

---

site_id	AC8
Number of Residues	4
Details	binding site for residue PO4 B 506

Chain	Residue
B	ASN250
B	ASP251
B	ARG301
B	THR302

---

site_id	AC9
Number of Residues	9
Details	binding site for residue SAH C 501

Chain	Residue
C	ARG253
C	GLY271
C	ASP296
C	THR297
C	THR337
C	GLU338
C	HIS342
C	THR344
C	LEU351

---

site_id	AD1
Number of Residues	2
Details	binding site for residue MG C 502

Chain	Residue
C	GLN64
C	TYR122

---

site_id	AD2
Number of Residues	5
Details	binding site for residue PO4 C 503

Chain	Residue
C	ASN369
C	GLY417
C	GLY424
C	GLU425
C	THR426

---

site_id	AD3
Number of Residues	4
Details	binding site for residue MG D 401

Chain	Residue
D	ASP183
D	ASP185
D	ASP288
D	HOH507

---

site_id	AD4
Number of Residues	8
Details	binding site for residue ATP D 402

Chain	Residue
D	PRO20
D	GLY21
D	GLY23
D	LYS24
D	SER25
D	THR26
E	ASN370
E	GLU372

---

site_id	AD5
Number of Residues	15
Details	binding site for residue ATP E 501

Chain	Residue
E	MG502
E	HOH613
E	THR25
E	ILE26
E	LYS60
E	LYS61
E	TYR62
E	TYR66
E	ARG83
E	GLU120
E	PHE234
E	GLU294
E	LYS313
E	ARG315
E	LEU394

---

site_id	AD6
Number of Residues	5
Details	binding site for residue MG E 502

Chain	Residue
E	TYR62
E	GLU120
E	GLU294
E	ATP501
E	HOH607

---

site_id	AD7
Number of Residues	3
Details	binding site for residue PO4 E 503

Chain	Residue
E	ASP110
E	TYR241
E	ARG245

---

site_id	AD8
Number of Residues	10
Details	binding site for residue SAH F 501

Chain	Residue
F	HIS250
F	GLY271
F	GLY273
F	ASP296
F	THR297
F	THR337
F	VAL339
F	ASN343
F	THR344
F	LEU351

---

site_id	AD9
Number of Residues	3
Details	binding site for residue MG F 502

Chain	Residue
F	GLN64
F	TYR122
F	TYR181

---

site_id	AE1
Number of Residues	4
Details	binding site for residue PO4 F 503

Chain	Residue
F	TYR57
F	HIS176
F	TYR181
F	TYR184

---

site_id	AE2
Number of Residues	5
Details	binding site for residue PO4 F 504

Chain	Residue
F	ASN369
F	PRO395
F	GLY424
F	GLU425
F	THR426

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