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4XRP

Structure of the Pnkp1/Rnl/Hen1 RNA repair complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0047846molecular_functiondeoxynucleotide 3'-phosphatase activity
C0001510biological_processRNA methylation
C0008171molecular_functionO-methyltransferase activity
C0008173molecular_functionRNA methyltransferase activity
D0047846molecular_functiondeoxynucleotide 3'-phosphatase activity
F0001510biological_processRNA methylation
F0008171molecular_functionO-methyltransferase activity
F0008173molecular_functionRNA methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue PO4 A 401
ChainResidue
AALA19
AGLY21
ASER22
AGLY23
ALYS24
ASER25
AARG126

site_idAC2
Number of Residues3
Detailsbinding site for residue MG A 402
ChainResidue
AASP288
AASP183
AASP185

site_idAC3
Number of Residues4
Detailsbinding site for residue SO4 A 403
ChainResidue
ATYR169
AALA170
AGLN172
APHE281

site_idAC4
Number of Residues2
Detailsbinding site for residue SO4 A 404
ChainResidue
AASP249
ATYR250

site_idAC5
Number of Residues2
Detailsbinding site for residue MG B 401
ChainResidue
BGLU43
BSO4403

site_idAC6
Number of Residues3
Detailsbinding site for residue MG B 402
ChainResidue
BLYS60
BLYS61
BGLU120

site_idAC7
Number of Residues5
Detailsbinding site for residue SO4 B 403
ChainResidue
BSER32
BVAL33
BGLU34
BGLU43
BMG401

site_idAC8
Number of Residues6
Detailsbinding site for residue GOL B 404
ChainResidue
BSER23
BPRO24
BILE26
BTYR66
BARG83
BGLU120

site_idAC9
Number of Residues2
Detailsbinding site for residue SO4 C 501
ChainResidue
CLEU31
CHIS78

site_idAD1
Number of Residues6
Detailsbinding site for residue GOL C 502
ChainResidue
CSER125
CTHR126
CTRP127
CTHR178
CARG216
CPHE377

site_idAD2
Number of Residues6
Detailsbinding site for residue GOL C 503
ChainResidue
CSER125
CTYR128
CSER129
CLYS130
CGLY149
CASN150

site_idAD3
Number of Residues4
Detailsbinding site for residue GOL C 504
ChainResidue
CVAL205
CPRO206
CTYR207
CGLU238

site_idAD4
Number of Residues5
Detailsbinding site for residue PO4 D 401
ChainResidue
DGLY21
DSER22
DGLY23
DLYS24
DSER25

site_idAD5
Number of Residues4
Detailsbinding site for residue MG D 402
ChainResidue
DASP183
DASP185
DASP287
DASP288

site_idAD6
Number of Residues3
Detailsbinding site for residue SO4 E 401
ChainResidue
EPHE234
ELYS299
EPRO310

site_idAD7
Number of Residues5
Detailsbinding site for residue SO4 E 402
ChainResidue
ELYS31
ESER32
EVAL33
EGLU34
EGLU43

site_idAD8
Number of Residues3
Detailsbinding site for residue SO4 F 501
ChainResidue
FASN17
FLYS100
FTRP101

site_idAD9
Number of Residues3
Detailsbinding site for residue SO4 F 502
ChainResidue
FHIS78
FGLU82
FTYR195

site_idAE1
Number of Residues5
Detailsbinding site for residue GOL F 503
ChainResidue
FSER125
FTHR126
FTRP127
FTHR178
FARG216

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PDB entries from 2025-06-18

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