4XRP
Structure of the Pnkp1/Rnl/Hen1 RNA repair complex
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003690 | molecular_function | double-stranded DNA binding |
| A | 0005524 | molecular_function | ATP binding |
| A | 0006281 | biological_process | DNA repair |
| A | 0046403 | molecular_function | polynucleotide 3'-phosphatase activity |
| A | 0046404 | molecular_function | ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0047846 | molecular_function | deoxynucleotide 3'-phosphatase activity |
| B | 0005524 | molecular_function | ATP binding |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0001510 | biological_process | RNA methylation |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0008168 | molecular_function | methyltransferase activity |
| C | 0008171 | molecular_function | O-methyltransferase activity |
| C | 0008173 | molecular_function | RNA methyltransferase activity |
| C | 0016070 | biological_process | RNA metabolic process |
| C | 0030422 | biological_process | siRNA processing |
| C | 0031047 | biological_process | regulatory ncRNA-mediated gene silencing |
| C | 0032259 | biological_process | methylation |
| C | 0034587 | biological_process | piRNA processing |
| D | 0003690 | molecular_function | double-stranded DNA binding |
| D | 0005524 | molecular_function | ATP binding |
| D | 0006281 | biological_process | DNA repair |
| D | 0046403 | molecular_function | polynucleotide 3'-phosphatase activity |
| D | 0046404 | molecular_function | ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity |
| D | 0046872 | molecular_function | metal ion binding |
| D | 0047846 | molecular_function | deoxynucleotide 3'-phosphatase activity |
| E | 0005524 | molecular_function | ATP binding |
| E | 0046872 | molecular_function | metal ion binding |
| F | 0001510 | biological_process | RNA methylation |
| F | 0005737 | cellular_component | cytoplasm |
| F | 0008168 | molecular_function | methyltransferase activity |
| F | 0008171 | molecular_function | O-methyltransferase activity |
| F | 0008173 | molecular_function | RNA methyltransferase activity |
| F | 0016070 | biological_process | RNA metabolic process |
| F | 0030422 | biological_process | siRNA processing |
| F | 0031047 | biological_process | regulatory ncRNA-mediated gene silencing |
| F | 0032259 | biological_process | methylation |
| F | 0034587 | biological_process | piRNA processing |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 7 |
| Details | binding site for residue PO4 A 401 |
| Chain | Residue |
| A | ALA19 |
| A | GLY21 |
| A | SER22 |
| A | GLY23 |
| A | LYS24 |
| A | SER25 |
| A | ARG126 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | binding site for residue MG A 402 |
| Chain | Residue |
| A | ASP288 |
| A | ASP183 |
| A | ASP185 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 403 |
| Chain | Residue |
| A | TYR169 |
| A | ALA170 |
| A | GLN172 |
| A | PHE281 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 404 |
| Chain | Residue |
| A | ASP249 |
| A | TYR250 |
| site_id | AC5 |
| Number of Residues | 2 |
| Details | binding site for residue MG B 401 |
| Chain | Residue |
| B | GLU43 |
| B | SO4403 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue MG B 402 |
| Chain | Residue |
| B | LYS60 |
| B | LYS61 |
| B | GLU120 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 B 403 |
| Chain | Residue |
| B | SER32 |
| B | VAL33 |
| B | GLU34 |
| B | GLU43 |
| B | MG401 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 404 |
| Chain | Residue |
| B | SER23 |
| B | PRO24 |
| B | ILE26 |
| B | TYR66 |
| B | ARG83 |
| B | GLU120 |
| site_id | AC9 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 C 501 |
| Chain | Residue |
| C | LEU31 |
| C | HIS78 |
| site_id | AD1 |
| Number of Residues | 6 |
| Details | binding site for residue GOL C 502 |
| Chain | Residue |
| C | SER125 |
| C | THR126 |
| C | TRP127 |
| C | THR178 |
| C | ARG216 |
| C | PHE377 |
| site_id | AD2 |
| Number of Residues | 6 |
| Details | binding site for residue GOL C 503 |
| Chain | Residue |
| C | SER125 |
| C | TYR128 |
| C | SER129 |
| C | LYS130 |
| C | GLY149 |
| C | ASN150 |
| site_id | AD3 |
| Number of Residues | 4 |
| Details | binding site for residue GOL C 504 |
| Chain | Residue |
| C | VAL205 |
| C | PRO206 |
| C | TYR207 |
| C | GLU238 |
| site_id | AD4 |
| Number of Residues | 5 |
| Details | binding site for residue PO4 D 401 |
| Chain | Residue |
| D | GLY21 |
| D | SER22 |
| D | GLY23 |
| D | LYS24 |
| D | SER25 |
| site_id | AD5 |
| Number of Residues | 4 |
| Details | binding site for residue MG D 402 |
| Chain | Residue |
| D | ASP183 |
| D | ASP185 |
| D | ASP287 |
| D | ASP288 |
| site_id | AD6 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 E 401 |
| Chain | Residue |
| E | PHE234 |
| E | LYS299 |
| E | PRO310 |
| site_id | AD7 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 E 402 |
| Chain | Residue |
| E | LYS31 |
| E | SER32 |
| E | VAL33 |
| E | GLU34 |
| E | GLU43 |
| site_id | AD8 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 F 501 |
| Chain | Residue |
| F | ASN17 |
| F | LYS100 |
| F | TRP101 |
| site_id | AD9 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 F 502 |
| Chain | Residue |
| F | HIS78 |
| F | GLU82 |
| F | TYR195 |
| site_id | AE1 |
| Number of Residues | 5 |
| Details | binding site for residue GOL F 503 |
| Chain | Residue |
| F | SER125 |
| F | THR126 |
| F | TRP127 |
| F | THR178 |
| F | ARG216 |
