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4XO5

Crystal Structure of E. coli Aminopeptidase N in complex with L-Glutamate

Functional Information from GO Data
ChainGOidnamespacecontents
A0004177molecular_functionaminopeptidase activity
A0005515molecular_functionprotein binding
A0005886cellular_componentplasma membrane
A0006508biological_processproteolysis
A0008237molecular_functionmetallopeptidase activity
A0008270molecular_functionzinc ion binding
A0042802molecular_functionidentical protein binding
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 901
ChainResidue
AHIS297
AHIS301
AGLU320
AGLU902

site_idAC2
Number of Residues17
Detailsbinding site for residue GLU A 902
ChainResidue
AGLU264
AHIS297
AGLU298
AHIS301
ALYS319
AGLU320
ATYR376
ATYR381
AZN901
AHOH1028
AHOH1182
AHOH1465
AGLN119
AGLU121
AMET260
AALA262
AMET263

site_idAC3
Number of Residues12
Detailsbinding site for residue GLU A 903
ChainResidue
AALA638
AARG641
AGLU642
AARG686
APHE690
AALA722
ANA909
AHOH1004
AHOH1191
AHOH1534
AHOH1548
AHOH1640

site_idAC4
Number of Residues6
Detailsbinding site for residue NA A 904
ChainResidue
AASP452
ANA906
AGOL918
AHOH1591
AHOH1783
AHOH1804

site_idAC5
Number of Residues6
Detailsbinding site for residue NA A 905
ChainResidue
ASER332
AASP333
AGLY335
AHOH1597
AHOH1691
AHOH1795

site_idAC6
Number of Residues7
Detailsbinding site for residue NA A 906
ChainResidue
AASP452
ATYR544
ANA904
AHOH1234
AHOH1703
AHOH1788
AHOH1804

site_idAC7
Number of Residues6
Detailsbinding site for residue NA A 907
ChainResidue
AILE23
AARG140
APHE141
ATHR142
AHOH1082
AHOH1758

site_idAC8
Number of Residues5
Detailsbinding site for residue NA A 908
ChainResidue
AGLU371
AHOH1017
AHOH1070
AHOH1111
AHOH1520

site_idAC9
Number of Residues3
Detailsbinding site for residue NA A 909
ChainResidue
ATHR645
AGLU903
AHOH1627

site_idAD1
Number of Residues6
Detailsbinding site for residue NA A 910
ChainResidue
AARG349
AASP566
ASER570
AGOL917
AHOH1829
AHOH1872

site_idAD2
Number of Residues5
Detailsbinding site for residue NA A 911
ChainResidue
AGLN19
AILE20
ALEU138
AHOH1634
AHOH1831

site_idAD3
Number of Residues5
Detailsbinding site for residue NA A 912
ChainResidue
AGLU426
AASP432
ASER434
AHOH1265
AHOH1780

site_idAD4
Number of Residues5
Detailsbinding site for residue NA A 913
ChainResidue
AHIS771
APHE774
AHOH1271
AHOH1467
AHOH1702

site_idAD5
Number of Residues11
Detailsbinding site for residue GOL A 914
ChainResidue
ASER63
AVAL64
ATRP71
ATRP74
AARG669
AVAL670
AGLU671
AGOL916
AGOL919
AHOH1142
AHOH1267

site_idAD6
Number of Residues5
Detailsbinding site for residue GOL A 915
ChainResidue
ALYS286
AHOH1009
AHOH1105
AHOH1874
ATHR284

site_idAD7
Number of Residues5
Detailsbinding site for residue GOL A 916
ChainResidue
ATRP74
AGOL914
AHOH1016
AHOH1142
AHOH1589

site_idAD8
Number of Residues6
Detailsbinding site for residue GOL A 917
ChainResidue
ALEU532
ATRP546
AASP566
AALA567
ASER570
ANA910

site_idAD9
Number of Residues5
Detailsbinding site for residue GOL A 918
ChainResidue
AGLN164
AASP452
ATYR454
ANA904
AHOH1022

site_idAE1
Number of Residues6
Detailsbinding site for residue GOL A 919
ChainResidue
ALEU61
AVAL62
ATRP74
AARG669
AGLU671
AGOL914

site_idAE2
Number of Residues5
Detailsbinding site for residue GOL A 920
ChainResidue
AMET260
ATYR376
ATYR381
AGLU382
AARG825

site_idAE3
Number of Residues5
Detailsbinding site for residue MLI A 921
ChainResidue
APHE704
ALYS738
ATRP739
AHOH1020
AHOH1586

site_idAE4
Number of Residues8
Detailsbinding site for residue MLI A 922
ChainResidue
AASN259
ALYS274
APRO779
AASN780
AARG783
AHOH1018
AHOH1257
AHOH1295

Functional Information from PROSITE/UniProt
site_idPS00142
Number of Residues10
DetailsZINC_PROTEASE Neutral zinc metallopeptidases, zinc-binding region signature. VIGHEYFHNW
ChainResidueDetails
AVAL294-TRP303

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000305|PubMed:16885166, ECO:0000305|PubMed:18416562, ECO:0000305|PubMed:19622865
ChainResidueDetails
AGLU298

site_idSWS_FT_FI2
Number of Residues5
DetailsBINDING:
ChainResidueDetails
AGLU121
AGLY261
AHIS297
AHIS301
AGLU320

site_idSWS_FT_FI3
Number of Residues1
DetailsSITE: Transition state stabilizer => ECO:0000305
ChainResidueDetails
ATYR381

224931

PDB entries from 2024-09-11

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