4XG1
Psychromonas ingrahamii diaminopimelate decarboxylase with LLP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0008652 | biological_process | amino acid biosynthetic process |
| A | 0008836 | molecular_function | diaminopimelate decarboxylase activity |
| A | 0009085 | biological_process | lysine biosynthetic process |
| A | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| A | 0016829 | molecular_function | lyase activity |
| A | 0016831 | molecular_function | carboxy-lyase activity |
| A | 0030170 | molecular_function | pyridoxal phosphate binding |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0008652 | biological_process | amino acid biosynthetic process |
| B | 0008836 | molecular_function | diaminopimelate decarboxylase activity |
| B | 0009085 | biological_process | lysine biosynthetic process |
| B | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| B | 0016829 | molecular_function | lyase activity |
| B | 0016831 | molecular_function | carboxy-lyase activity |
| B | 0030170 | molecular_function | pyridoxal phosphate binding |
| C | 0003824 | molecular_function | catalytic activity |
| C | 0008652 | biological_process | amino acid biosynthetic process |
| C | 0008836 | molecular_function | diaminopimelate decarboxylase activity |
| C | 0009085 | biological_process | lysine biosynthetic process |
| C | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| C | 0016829 | molecular_function | lyase activity |
| C | 0016831 | molecular_function | carboxy-lyase activity |
| C | 0030170 | molecular_function | pyridoxal phosphate binding |
| D | 0003824 | molecular_function | catalytic activity |
| D | 0008652 | biological_process | amino acid biosynthetic process |
| D | 0008836 | molecular_function | diaminopimelate decarboxylase activity |
| D | 0009085 | biological_process | lysine biosynthetic process |
| D | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| D | 0016829 | molecular_function | lyase activity |
| D | 0016831 | molecular_function | carboxy-lyase activity |
| D | 0030170 | molecular_function | pyridoxal phosphate binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | binding site for residue SCN A 501 |
| Chain | Residue |
| A | SER386 |
| A | LEU412 |
| B | ARG89 |
| B | K504 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue SCN A 502 |
| Chain | Residue |
| A | PRO346 |
| A | ASN385 |
| A | ARG387 |
| B | VAL82 |
| B | HOH675 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | binding site for residue SCN A 503 |
| Chain | Residue |
| A | VAL82 |
| A | GLY104 |
| A | VAL105 |
| A | GLY106 |
| A | LYS107 |
| A | GLU111 |
| B | PRO346 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | binding site for residue SCN A 504 |
| Chain | Residue |
| A | GLN92 |
| B | TRP413 |
| C | TRP413 |
| D | GLN92 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | binding site for residue K A 505 |
| Chain | Residue |
| A | ALA186 |
| A | SER187 |
| A | LEU189 |
| A | LEU192 |
| A | HOH647 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | binding site for residue K A 506 |
| Chain | Residue |
| A | HIS417 |
| A | ILE418 |
| D | HIS417 |
| D | ILE418 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | binding site for residue TME A 507 |
| Chain | Residue |
| A | SER127 |
| A | ILE128 |
| A | ILE174 |
| B | LEU293 |
| site_id | AC8 |
| Number of Residues | 18 |
| Details | binding site for residue LLP A 508 |
| Chain | Residue |
| A | LYS61 |
| A | ASP80 |
| A | SER103 |
| A | HIS200 |
| A | SER203 |
| A | GLY240 |
| A | GLU274 |
| A | GLY276 |
| A | ARG277 |
| A | ARG313 |
| A | TYR317 |
| A | TYR376 |
| A | MET380 |
| A | HOH616 |
| A | HOH678 |
| B | CYS348 |
| B | GLU349 |
| B | TYR384 |
| site_id | AC9 |
| Number of Residues | 3 |
| Details | binding site for residue SCN B 501 |
| Chain | Residue |
| B | ARG150 |
| B | HIS200 |
| B | LLP508 |
| site_id | AD1 |
| Number of Residues | 7 |
| Details | binding site for residue SCN B 502 |
| Chain | Residue |
| B | PRO325 |
| B | LEU326 |
| B | TYR330 |
| B | ALA361 |
| B | LEU362 |
| B | ASP366 |
| B | TYR367 |
| site_id | AD2 |
| Number of Residues | 5 |
| Details | binding site for residue K B 503 |
| Chain | Residue |
| B | ALA186 |
| B | SER187 |
| B | LEU189 |
| B | LEU192 |
| B | HOH649 |
| site_id | AD3 |
| Number of Residues | 1 |
| Details | binding site for residue K B 504 |
| Chain | Residue |
| A | SCN501 |
| site_id | AD4 |
| Number of Residues | 3 |
| Details | binding site for residue TME B 505 |
| Chain | Residue |
| B | GLU207 |
| B | ILE208 |
| B | ALA209 |
| site_id | AD5 |
| Number of Residues | 2 |
| Details | binding site for residue TME B 507 |
| Chain | Residue |
| B | ALA36 |
| B | GLU39 |
| site_id | AD6 |
| Number of Residues | 20 |
| Details | binding site for residue LLP B 508 |
| Chain | Residue |
| A | CYS348 |
| A | GLU349 |
| A | TYR384 |
| B | ALA59 |
| B | LYS61 |
| B | ASP80 |
| B | HIS200 |
| B | SER203 |
| B | GLY240 |
| B | GLU274 |
| B | GLY276 |
| B | ARG277 |
| B | ARG313 |
| B | TYR317 |
| B | TYR376 |
| B | MET380 |
| B | SCN501 |
| B | HOH622 |
| B | HOH625 |
| B | HOH630 |
| site_id | AD7 |
| Number of Residues | 4 |
| Details | binding site for residue SCN C 501 |
| Chain | Residue |
| C | THR350 |
| D | PHE172 |
| D | HIS200 |
| D | LLP504 |
| site_id | AD8 |
| Number of Residues | 8 |
| Details | binding site for residue SCN C 502 |
| Chain | Residue |
| C | LEU241 |
| C | TYR256 |
| C | PRO275 |
| C | LLP504 |
| C | HOH628 |
| C | GLY238 |
| C | GLY239 |
| C | GLY240 |
| site_id | AD9 |
| Number of Residues | 5 |
| Details | binding site for residue K C 503 |
| Chain | Residue |
| C | ALA186 |
| C | SER187 |
| C | LEU189 |
| C | LEU192 |
| C | HOH656 |
| site_id | AE1 |
| Number of Residues | 23 |
| Details | binding site for residue LLP C 504 |
| Chain | Residue |
| C | ALA59 |
| C | LYS61 |
| C | ASP80 |
| C | HIS200 |
| C | SER203 |
| C | GLY239 |
| C | GLY240 |
| C | GLU274 |
| C | PRO275 |
| C | GLY276 |
| C | ARG277 |
| C | ARG313 |
| C | TYR317 |
| C | TYR376 |
| C | MET380 |
| C | SCN502 |
| C | HOH624 |
| C | HOH628 |
| C | HOH658 |
| D | CYS348 |
| D | GLU349 |
| D | TYR384 |
| D | SCN501 |
| site_id | AE2 |
| Number of Residues | 3 |
| Details | binding site for residue SCN D 501 |
| Chain | Residue |
| C | HIS200 |
| C | LLP504 |
| D | THR350 |
| site_id | AE3 |
| Number of Residues | 5 |
| Details | binding site for residue K D 502 |
| Chain | Residue |
| D | ALA186 |
| D | SER187 |
| D | LEU189 |
| D | LEU192 |
| D | HOH642 |
| site_id | AE4 |
| Number of Residues | 2 |
| Details | binding site for residue TME D 503 |
| Chain | Residue |
| D | LYS25 |
| D | ALA400 |
| site_id | AE5 |
| Number of Residues | 17 |
| Details | binding site for residue LLP D 504 |
| Chain | Residue |
| C | CYS348 |
| C | GLU349 |
| C | TYR384 |
| C | SCN501 |
| D | LYS61 |
| D | ASP80 |
| D | HIS200 |
| D | SER203 |
| D | GLY239 |
| D | GLY240 |
| D | GLU274 |
| D | GLY276 |
| D | ARG277 |
| D | ARG313 |
| D | TYR317 |
| D | TYR376 |
| D | MET380 |
Functional Information from PROSITE/UniProt
| site_id | PS00878 |
| Number of Residues | 19 |
| Details | ODR_DC_2_1 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. YAvKANsnlaVLnlMarmG |
| Chain | Residue | Details |
| A | TYR58-GLY76 |
| site_id | PS00879 |
| Number of Residues | 17 |
| Details | ODR_DC_2_2 Orn/DAP/Arg decarboxylases family 2 signature 2. Aekgit.IsHLDLGGGLG |
| Chain | Residue | Details |
| A | ALA226-GLY242 |
