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4XD1

X-ray structure of the N-formyltransferase QdtF from Providencia alcalifaciens, W305A mutant, in the presence of TDP-Qui3N and N5-THF

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004479molecular_functionmethionyl-tRNA formyltransferase activity
A0005829cellular_componentcytosol
A0006413biological_processtranslational initiation
A0009058biological_processbiosynthetic process
A0071951biological_processconversion of methionyl-tRNA to N-formyl-methionyl-tRNA
Functional Information from PDB Data
site_idAC1
Number of Residues18
Detailsbinding site for residue FON A 401
ChainResidue
APHE76
AASP130
ATYR187
ASER189
ALYS190
AT3Q402
AHOH501
AHOH721
AHOH723
AHOH926
AASP77
ALYS78
AILE79
AILE80
AASP126
AHIS127
AGLY128
AILE129

site_idAC2
Number of Residues26
Detailsbinding site for residue T3Q A 402
ChainResidue
ALYS8
AGLU75
APHE76
AGLY103
AMET104
ATYR105
ATHR106
ASER107
ATYR152
ATYR195
APHE218
ATYR221
AGLN222
AFON401
AHOH606
AHOH717
AHOH718
AHOH719
AHOH720
AHOH721
AHOH722
AHOH806
AHOH809
AHOH905
AHOH964
AHOH965

site_idAC3
Number of Residues6
Detailsbinding site for residue NA A 403
ChainResidue
AASN39
ASER41
AGLN43
AHOH713
AHOH716
AHOH971

site_idAC4
Number of Residues5
Detailsbinding site for residue NA A 404
ChainResidue
AILE135
ASER176
AHOH578
AHOH630
AHOH748

site_idAC5
Number of Residues6
Detailsbinding site for residue NA A 405
ChainResidue
ATYR105
ALYS190
AILE193
AHOH644
AHOH798
AHOH805

site_idAC6
Number of Residues6
Detailsbinding site for residue K A 406
ChainResidue
ASER241
ASER259
ATHR260
AHOH576
AHOH706
AHOH1045

site_idAC7
Number of Residues5
Detailsbinding site for residue NA A 407
ChainResidue
ASER288
ALEU291
AHOH610
AHOH643
AHOH693

site_idAC8
Number of Residues6
Detailsbinding site for residue EDO A 408
ChainResidue
ALYS149
APHE298
AGLU299
AHOH732
AHOH735
AHOH975

site_idAC9
Number of Residues7
Detailsbinding site for residue EDO A 409
ChainResidue
APRO99
AGLU179
ASER181
ALYS289
AHOH532
AHOH681
AHOH794

site_idAD1
Number of Residues8
Detailsbinding site for residue EDO A 410
ChainResidue
ATYR254
AASN271
ALEU290
ALYS292
AHOH567
AHOH705
AHOH838
AHOH1012

site_idAD2
Number of Residues3
Detailsbinding site for residue EDO A 411
ChainResidue
AILE26
ALEU28
APRO56

site_idAD3
Number of Residues8
Detailsbinding site for residue EDO A 412
ChainResidue
ALYS204
AHOH505
AHOH521
AHOH558
AHOH823
ATRP109
ATYR188
ASER192

site_idAD4
Number of Residues2
Detailsbinding site for residue CL A 413
ChainResidue
AILE387
AGLU388

site_idAD5
Number of Residues5
Detailsbinding site for residue CL A 414
ChainResidue
ALYS345
AMET381
AASN384
AASN386
AHOH903

site_idAD6
Number of Residues3
Detailsbinding site for residue CL A 415
ChainResidue
ALYS8
AASN33
AHOH963

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PDB entries from 2024-08-28

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