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4XCZ

X-ray structure of the N-formyltransferase QdtF from Providencia alcalifaciens in complex with TDP-Qui3n and N5-THF

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004479molecular_functionmethionyl-tRNA formyltransferase activity
A0005829cellular_componentcytosol
A0006413biological_processtranslational initiation
A0009058biological_processbiosynthetic process
A0071951biological_processconversion of methionyl-tRNA to N-formyl-methionyl-tRNA
Functional Information from PDB Data
site_idAC1
Number of Residues18
Detailsbinding site for residue FON A 401
ChainResidue
APHE76
AASP130
ATYR187
ASER189
ALYS190
AT3Q402
AHOH695
AHOH697
AHOH911
AHOH947
AASP77
ALYS78
AILE79
AILE80
AASP126
AHIS127
AGLY128
AILE129

site_idAC2
Number of Residues26
Detailsbinding site for residue T3Q A 402
ChainResidue
ALYS8
AGLU75
APHE76
AGLY103
AMET104
ATYR105
ATHR106
ASER107
ATYR152
ATYR195
APHE218
ATYR221
AGLN222
AFON401
AHOH568
AHOH691
AHOH692
AHOH693
AHOH694
AHOH695
AHOH696
AHOH782
AHOH786
AHOH888
AHOH952
AHOH953

site_idAC3
Number of Residues19
Detailsbinding site for residue T3Q A 403
ChainResidue
AHIS302
ATRP305
AILE309
AILE310
ATYR313
AHIS314
AASN334
ALYS336
ATHR338
AMET342
ATYR343
AASP346
ATYR380
AHOH558
AHOH850
AHOH851
AHOH854
AHOH855
AHOH948

site_idAC4
Number of Residues6
Detailsbinding site for residue NA A 404
ChainResidue
AASN39
ASER41
AGLN43
AHOH685
AHOH690
AHOH960

site_idAC5
Number of Residues5
Detailsbinding site for residue NA A 405
ChainResidue
AILE135
ASER176
AHOH561
AHOH616
AHOH721

site_idAC6
Number of Residues6
Detailsbinding site for residue NA A 406
ChainResidue
ATYR105
ALYS190
AILE193
AHOH630
AHOH773
AHOH781

site_idAC7
Number of Residues7
Detailsbinding site for residue K A 407
ChainResidue
ASER241
ASER243
ASER259
ATHR260
AHOH532
AHOH651
AHOH679

site_idAC8
Number of Residues7
Detailsbinding site for residue NA A 408
ChainResidue
ALYS196
AASN197
AASN384
ALYS385
AASN386
AHOH605
AHOH636

site_idAC9
Number of Residues8
Detailsbinding site for residue NA A 409
ChainResidue
AHOH632
AHOH648
AHOH838
ASER288
ALEU291
AHOH508
AHOH512
AHOH607

site_idAD1
Number of Residues5
Detailsbinding site for residue CL A 410
ChainResidue
ALYS345
AMET381
AASN384
AASN386
AHOH885

site_idAD2
Number of Residues5
Detailsbinding site for residue EDO A 411
ChainResidue
ALYS149
APHE298
AGLU299
AHOH706
AHOH709

site_idAD3
Number of Residues6
Detailsbinding site for residue EDO A 412
ChainResidue
AGLY38
AGLY38
AHOH515
AHOH515
AHOH549
AHOH549

site_idAD4
Number of Residues7
Detailsbinding site for residue EDO A 413
ChainResidue
APRO99
AGLU179
AGLN180
ASER181
ALYS289
AHOH541
AHOH769

site_idAD5
Number of Residues8
Detailsbinding site for residue EDO A 414
ChainResidue
ATYR254
AASN271
ALEU290
ALYS292
AHOH578
AHOH680
AHOH817
AHOH1018

site_idAD6
Number of Residues4
Detailsbinding site for residue EDO A 415
ChainResidue
AILE26
AGLU27
ALEU28
APRO56

221051

PDB entries from 2024-06-12

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