4X9C

1.4A crystal structure of Hfq from Methanococcus jannaschii

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003723	molecular_function	RNA binding
A	0006355	biological_process	regulation of DNA-templated transcription
B	0003723	molecular_function	RNA binding
B	0006355	biological_process	regulation of DNA-templated transcription
C	0003723	molecular_function	RNA binding
C	0006355	biological_process	regulation of DNA-templated transcription
D	0003723	molecular_function	RNA binding
D	0006355	biological_process	regulation of DNA-templated transcription
E	0003723	molecular_function	RNA binding
E	0006355	biological_process	regulation of DNA-templated transcription
F	0003723	molecular_function	RNA binding
F	0006355	biological_process	regulation of DNA-templated transcription

Functional Information from PDB Data

site_id	AC1
Number of Residues	10
Details	binding site for residue PEG A 101

Chain	Residue
A	TYR48
B	LYS63
A	GLU49
A	PHE62
A	HIS64
A	HOH224
A	HOH236
B	GLU18
B	ALA20
B	ASN47

---

site_id	AC2
Number of Residues	6
Details	binding site for residue PGE A 102

Chain	Residue
A	LYS27
A	LYS29
A	TYR71
D	LYS27
D	LYS29
D	TYR71

---

site_id	AC3
Number of Residues	9
Details	binding site for residue EDO A 103

Chain	Residue
A	LEU32
A	ARG33
A	GLY35
A	ASP67
A	HOH210
A	HOH223
C	ASN16
F	ASN34
F	HOH252

---

site_id	AC4
Number of Residues	5
Details	binding site for residue EDO A 104

Chain	Residue
A	THR43
A	MET51
B	TYR71
B	EDO103
B	HOH243

---

site_id	AC5
Number of Residues	6
Details	binding site for residue PEG B 101

Chain	Residue
B	VAL28
B	LYS29
B	ASP39
B	GLU70
B	TYR71
B	HOH246

---

site_id	AC6
Number of Residues	5
Details	binding site for residue NA B 102

Chain	Residue
B	MET51
B	VAL52
B	LEU59
B	HOH228
C	TYR71

---

site_id	AC7
Number of Residues	2
Details	binding site for residue EDO B 103

Chain	Residue
A	EDO104
B	ARG22

---

site_id	AC8
Number of Residues	3
Details	binding site for residue NA C 101

Chain	Residue
C	HIS64
D	PEG101
D	HOH228

---

site_id	AC9
Number of Residues	1
Details	binding site for residue EDO C 102

Chain	Residue
C	ARG22

---

site_id	AD1
Number of Residues	4
Details	binding site for residue EDO C 103

Chain	Residue
C	LYS27
C	VAL28
C	LYS29
C	GLU70

---

site_id	AD2
Number of Residues	10
Details	binding site for residue PEG D 101

Chain	Residue
C	TYR48
C	PHE62
C	HIS64
C	NA101
D	ASN47
D	TYR48
D	LYS63
D	HIS64
D	HOH247
E	HOH242

---

site_id	AD3
Number of Residues	2
Details	binding site for residue CL D 102

Chain	Residue
E	NA103
E	HOH254

---

site_id	AD4
Number of Residues	10
Details	binding site for residue PEG E 101

Chain	Residue
D	TYR48
D	HOH247
E	TYR48
E	LYS63
E	HIS64
E	SO4106
E	HOH232
E	HOH242
E	HOH249
E	HOH250

---

site_id	AD5
Number of Residues	9
Details	binding site for residue PG4 E 102

Chain	Residue
E	ASN24
E	LYS26
E	TYR71
E	HOH209
E	HOH211
E	HOH248
F	LYS27
F	LYS29
F	TYR71

---

site_id	AD6
Number of Residues	5
Details	binding site for residue NA E 103

Chain	Residue
D	ARG33
D	ASN34
D	CL102
E	ARG33
E	ASP67

---

site_id	AD7
Number of Residues	5
Details	binding site for residue NA E 104

Chain	Residue
E	MET51
E	VAL52
E	LYS53
E	LEU59
F	TYR71

---

site_id	AD8
Number of Residues	7
Details	binding site for residue EDO E 105

Chain	Residue
E	LYS27
E	ASP39
E	LYS53
E	VAL54
E	GLY55
E	HOH206
E	HOH227

---

site_id	AD9
Number of Residues	7
Details	binding site for residue SO4 E 106

Chain	Residue
E	TYR48
E	HIS64
E	PEG101
E	HOH232
E	HOH260
F	TYR48
F	LYS63

---

site_id	AE1
Number of Residues	6
Details	binding site for residue PEG F 101

Chain	Residue
C	ASN24
F	GLU36
F	VAL37
F	ARG57
F	HOH203
F	HOH241

---

site_id	AE2
Number of Residues	9
Details	binding site for residue PEG F 102

Chain	Residue
A	ASN47
A	TYR48
A	LYS63
A	HOH217
F	TYR48
F	HIS64
F	HOH239
F	HOH247
F	HOH257

---

site_id	AE3
Number of Residues	9
Details	binding site for residue PG4 F 103

Chain	Residue
E	LYS27
E	LYS29
E	ASP39
E	GLU70
E	TYR71
E	HOH208
F	ASN24
F	LYS26
F	TYR71

---

site_id	AE4
Number of Residues	5
Details	binding site for residue NA F 104

Chain	Residue
A	ALA20
A	LYS63
F	GLU49
F	PHE62
F	HOH239

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	224
Details	Domain: {"description":"Sm","evidences":[{"source":"PROSITE-ProRule","id":"PRU01346","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

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