4X8O
Crystal structure of E. coli Adenylate kinase Y171W mutant in complex with inhibitor Ap5a
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0004017 | molecular_function | AMP kinase activity |
| A | 0004550 | molecular_function | nucleoside diphosphate kinase activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006139 | biological_process | nucleobase-containing compound metabolic process |
| A | 0006172 | biological_process | ADP biosynthetic process |
| A | 0009123 | biological_process | nucleoside monophosphate metabolic process |
| A | 0009132 | biological_process | nucleoside diphosphate metabolic process |
| A | 0009165 | biological_process | nucleotide biosynthetic process |
| A | 0015951 | biological_process | purine ribonucleotide interconversion |
| A | 0016208 | molecular_function | AMP binding |
| A | 0016301 | molecular_function | kinase activity |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
| A | 0019205 | molecular_function | nucleobase-containing compound kinase activity |
| A | 0044209 | biological_process | AMP salvage |
| A | 0046083 | biological_process | adenine metabolic process |
| A | 0046940 | biological_process | nucleoside monophosphate phosphorylation |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0004017 | molecular_function | AMP kinase activity |
| B | 0004550 | molecular_function | nucleoside diphosphate kinase activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0005524 | molecular_function | ATP binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0006139 | biological_process | nucleobase-containing compound metabolic process |
| B | 0006172 | biological_process | ADP biosynthetic process |
| B | 0009123 | biological_process | nucleoside monophosphate metabolic process |
| B | 0009132 | biological_process | nucleoside diphosphate metabolic process |
| B | 0009165 | biological_process | nucleotide biosynthetic process |
| B | 0015951 | biological_process | purine ribonucleotide interconversion |
| B | 0016208 | molecular_function | AMP binding |
| B | 0016301 | molecular_function | kinase activity |
| B | 0016740 | molecular_function | transferase activity |
| B | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
| B | 0019205 | molecular_function | nucleobase-containing compound kinase activity |
| B | 0044209 | biological_process | AMP salvage |
| B | 0046083 | biological_process | adenine metabolic process |
| B | 0046940 | biological_process | nucleoside monophosphate phosphorylation |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 39 |
| Details | binding site for residue AP5 A 301 |
| Chain | Residue |
| A | PRO9 |
| A | LEU35 |
| A | ARG36 |
| A | MET53 |
| A | LYS57 |
| A | VAL59 |
| A | GLU62 |
| A | VAL64 |
| A | GLY85 |
| A | ARG88 |
| A | GLN92 |
| A | GLY10 |
| A | ARG119 |
| A | ARG123 |
| A | VAL132 |
| A | TYR133 |
| A | HIS134 |
| A | PHE137 |
| A | ARG156 |
| A | ARG167 |
| A | GLY198 |
| A | LYS200 |
| A | ALA11 |
| A | VAL202 |
| A | MG302 |
| A | HOH435 |
| A | HOH460 |
| A | HOH462 |
| A | HOH478 |
| A | HOH530 |
| A | HOH557 |
| A | HOH558 |
| A | HOH579 |
| A | GLY12 |
| A | LYS13 |
| A | GLY14 |
| A | THR15 |
| A | THR31 |
| A | GLY32 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue MG A 302 |
| Chain | Residue |
| A | GLY14 |
| A | ASP84 |
| A | AP5301 |
| A | HOH579 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue NA A 303 |
| Chain | Residue |
| A | VAL103 |
| A | ASN190 |
| A | HOH417 |
| A | HOH444 |
| A | HOH452 |
| site_id | AC4 |
| Number of Residues | 40 |
| Details | binding site for residue AP5 B 301 |
| Chain | Residue |
| B | PRO9 |
| B | GLY10 |
| B | ALA11 |
| B | GLY12 |
| B | LYS13 |
| B | GLY14 |
| B | THR15 |
| B | THR31 |
| B | GLY32 |
| B | LEU35 |
| B | ARG36 |
| B | MET53 |
| B | LYS57 |
| B | LEU58 |
| B | VAL59 |
| B | VAL64 |
| B | GLY85 |
| B | PHE86 |
| B | ARG88 |
| B | GLN92 |
| B | ARG119 |
| B | ARG123 |
| B | TYR133 |
| B | HIS134 |
| B | PHE137 |
| B | ARG156 |
| B | ASP158 |
| B | ARG167 |
| B | LYS200 |
| B | VAL202 |
| B | MG302 |
| B | HOH429 |
| B | HOH458 |
| B | HOH460 |
| B | HOH484 |
| B | HOH518 |
| B | HOH530 |
| B | HOH531 |
| B | HOH532 |
| B | HOH535 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | binding site for residue MG B 302 |
| Chain | Residue |
| B | ASP84 |
| B | AP5301 |
| B | HOH534 |
Functional Information from PROSITE/UniProt
| site_id | PS00113 |
| Number of Residues | 12 |
| Details | ADENYLATE_KINASE Adenylate kinase signature. FLLDGFPRtipQ |
| Chain | Residue | Details |
| A | PHE81-GLN92 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 58 |
| Details | Region: {"description":"NMP","evidences":[{"source":"HAMAP-Rule","id":"MF_00235","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"8805521","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 74 |
| Details | Region: {"description":"LID","evidences":[{"source":"HAMAP-Rule","id":"MF_00235","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"8805521","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 26 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00235","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"1548697","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16302237","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19805185","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"7937733","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"8451239","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 8 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00235","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"1548697","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19805185","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"8451239","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"16302237","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00235","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"1548697","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16302237","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19805185","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"8451239","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"18723842","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
