4X0Y

JC polyomavirus VP1 from a genotype 3 strain

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005198	molecular_function	structural molecule activity
A	0019028	cellular_component	viral capsid
B	0005198	molecular_function	structural molecule activity
B	0019028	cellular_component	viral capsid
C	0005198	molecular_function	structural molecule activity
C	0019028	cellular_component	viral capsid
D	0005198	molecular_function	structural molecule activity
D	0019028	cellular_component	viral capsid
E	0005198	molecular_function	structural molecule activity
E	0019028	cellular_component	viral capsid

Functional Information from PDB Data

site_id	AC1
Number of Residues	9
Details	binding site for residue GOL A 301

Chain	Residue
A	SER62
A	SER64
A	SER69
A	ASP70
A	SER71
A	PRO72
A	MET76
A	HOH407
E	HIS121

---

site_id	AC2
Number of Residues	4
Details	binding site for residue EDO A 302

Chain	Residue
A	HIS142
A	GLY214
A	THR215
A	EDO303

---

site_id	AC3
Number of Residues	2
Details	binding site for residue EDO A 303

Chain	Residue
A	THR234
A	EDO302

---

site_id	AC4
Number of Residues	5
Details	binding site for residue EDO A 304

Chain	Residue
A	HIS142
A	LEU226
A	HIS227
A	ARG276
A	HOH437

---

site_id	AC5
Number of Residues	5
Details	binding site for residue EDO A 305

Chain	Residue
A	GLU208
A	ASN209
A	ARG211
A	ASP238
A	GLY243

---

site_id	AC6
Number of Residues	7
Details	binding site for residue K A 306

Chain	Residue
A	GLU68
A	ASP70
A	SER71
A	ARG161
A	THR163
A	HOH539
A	HOH551

---

site_id	AC7
Number of Residues	1
Details	binding site for residue EDO B 301

Chain	Residue
B	THR234

---

site_id	AC8
Number of Residues	3
Details	binding site for residue EDO B 302

Chain	Residue
B	HIS142
B	GLY214
B	THR215

---

site_id	AC9
Number of Residues	8
Details	binding site for residue GOL B 303

Chain	Residue
A	HIS121
B	SER62
B	SER64
B	SER69
B	ASP70
B	SER71
B	MET76
B	HOH417

---

site_id	AD1
Number of Residues	5
Details	binding site for residue EDO B 304

Chain	Residue
B	GLU208
B	ASN209
B	ARG211
B	ASP238
B	GLY243

---

site_id	AD2
Number of Residues	4
Details	binding site for residue EDO B 305

Chain	Residue
B	THR231
B	HOH504
C	ASP238
C	GLU239

---

site_id	AD3
Number of Residues	7
Details	binding site for residue K B 306

Chain	Residue
B	GLU68
B	ASP70
B	SER71
B	ARG161
B	THR163
B	HOH604
B	HOH508

---

site_id	AD4
Number of Residues	2
Details	binding site for residue EDO C 301

Chain	Residue
C	THR234
C	GOL303

---

site_id	AD5
Number of Residues	6
Details	binding site for residue EDO C 302

Chain	Residue
C	GLU208
C	ASN209
C	ARG211
C	ASP238
C	GLY243
C	HOH507

---

site_id	AD6
Number of Residues	5
Details	binding site for residue GOL C 303

Chain	Residue
C	HIS142
C	GLY214
C	THR215
C	EDO301
C	HOH600

---

site_id	AD7
Number of Residues	6
Details	binding site for residue EDO C 304

Chain	Residue
C	ALA126
C	ASN130
C	GLY131
C	HOH564
D	SER62
D	ILE63

---

site_id	AD8
Number of Residues	7
Details	binding site for residue K C 305

Chain	Residue
C	GLU68
C	ASP70
C	SER71
C	ARG161
C	THR163
C	HOH531
C	HOH593

---

site_id	AD9
Number of Residues	4
Details	binding site for residue EDO D 301

Chain	Residue
D	HIS142
D	GLY214
D	THR215
D	EDO305

---

site_id	AE1
Number of Residues	3
Details	binding site for residue EDO D 302

Chain	Residue
D	LEU226
D	HIS227
D	ARG276

---

site_id	AE2
Number of Residues	6
Details	binding site for residue EDO D 303

Chain	Residue
D	GLU208
D	ASN209
D	ARG211
D	ASP238
D	GLY243
D	HOH581

---

site_id	AE3
Number of Residues	8
Details	binding site for residue GOL D 304

Chain	Residue
C	HIS121
D	SER62
D	SER64
D	SER69
D	ASP70
D	SER71
D	MET76
D	HOH424

---

site_id	AE4
Number of Residues	3
Details	binding site for residue EDO D 305

Chain	Residue
D	PHE144
D	THR234
D	EDO301

---

site_id	AE5
Number of Residues	3
Details	binding site for residue EDO D 306

Chain	Residue
D	THR231
D	HOH598
E	GLU239

---

site_id	AE6
Number of Residues	7
Details	binding site for residue K D 307

Chain	Residue
D	GLU68
D	ASP70
D	SER71
D	ARG161
D	THR163
D	HOH541
D	HOH529

---

site_id	AE7
Number of Residues	2
Details	binding site for residue EDO E 301

Chain	Residue
E	THR234
E	EDO303

---

site_id	AE8
Number of Residues	6
Details	binding site for residue EDO E 302

Chain	Residue
E	GLU208
E	ASN209
E	ARG211
E	ASP238
E	VAL242
E	GLY243

---

site_id	AE9
Number of Residues	4
Details	binding site for residue EDO E 303

Chain	Residue
E	HIS142
E	GLY214
E	THR215
E	EDO301

---

site_id	AF1
Number of Residues	8
Details	binding site for residue GOL E 304

Chain	Residue
D	HIS121
E	SER62
E	SER64
E	SER69
E	ASP70
E	SER71
E	PRO72
E	HOH402

---

site_id	AF2
Number of Residues	7
Details	binding site for residue K E 305

Chain	Residue
E	GLU68
E	ASP70
E	SER71
E	ARG161
E	THR163
E	HOH485
E	HOH517

---

Functional Information from PROSITE/UniProt

site_id	PS00178
Number of Residues	12
Details	AA_TRNA_LIGASE_I Aminoacyl-transfer RNA synthetases class-I signature. PnlNEdLTCGNI

Chain	Residue	Details
A	PRO88-ILE99

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