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4WYD

Adenosylmethionine-8-amino-7-oxononanoate aminotransferase from Mycobacterium tuberculosis complexed with a fragment from DSF screening

Functional Information from GO Data
ChainGOidnamespacecontents
A0004015molecular_functionadenosylmethionine-8-amino-7-oxononanoate transaminase activity
A0005737cellular_componentcytoplasm
A0008483molecular_functiontransaminase activity
A0009102biological_processbiotin biosynthetic process
A0030170molecular_functionpyridoxal phosphate binding
B0004015molecular_functionadenosylmethionine-8-amino-7-oxononanoate transaminase activity
B0005737cellular_componentcytoplasm
B0008483molecular_functiontransaminase activity
B0009102biological_processbiotin biosynthetic process
B0030170molecular_functionpyridoxal phosphate binding
Functional Information from PDB Data
site_idAC1
Number of Residues17
Detailsbinding site for residue PLP A 501
ChainResidue
ATRP65
A3VR502
AHOH622
AHOH737
AHOH741
AHOH784
BGLY316
BPRO317
BTHR318
ASER125
ATYR157
AHIS158
AGLU220
AASP254
AILE256
AALA257
ALYS283

site_idAC2
Number of Residues11
Detailsbinding site for residue 3VR A 502
ChainResidue
ATYR25
ATRP64
ATRP65
ATYR157
AMET174
AALA226
APLP501
AEPE503
AHOH644
BGLY316
BTHR318

site_idAC3
Number of Residues11
Detailsbinding site for residue EPE A 503
ChainResidue
ATYR25
ASER27
AGLU31
ATRP64
AARG400
A3VR502
AHOH676
AHOH707
AHOH714
BGLY93
BGLY94

site_idAC4
Number of Residues7
Detailsbinding site for residue EDO A 504
ChainResidue
AARG193
AARG230
APHE231
AARG369
AHOH612
AHOH860
AHOH917

site_idAC5
Number of Residues4
Detailsbinding site for residue EDO A 505
ChainResidue
APRO234
ACYS371
AHOH611
AHOH890

site_idAC6
Number of Residues9
Detailsbinding site for residue EDO A 506
ChainResidue
AARG142
ALEU144
AHOH615
AHOH641
AHOH812
BARG154
BGLN185
BVAL186
BPHE187

site_idAC7
Number of Residues8
Detailsbinding site for residue EDO A 507
ChainResidue
AGLY355
ATHR358
ATHR423
ASER424
AHOH620
BARG85
BHOH829
BHOH935

site_idAC8
Number of Residues3
Detailsbinding site for residue EDO A 508
ChainResidue
AARG241
AARG245
AHOH638

site_idAC9
Number of Residues7
Detailsbinding site for residue EDO A 509
ChainResidue
AILE110
ATHR111
APRO112
AALA113
AASP270
AEDO510
BARG235

site_idAD1
Number of Residues4
Detailsbinding site for residue EDO A 510
ChainResidue
AASP270
AEDO509
BARG235
BHIS238

site_idAD2
Number of Residues11
Detailsbinding site for residue 3VR B 502
ChainResidue
AGLY316
ATHR318
BTYR25
BTRP64
BTRP65
BTYR157
BALA226
BPHE402
BPLP501
BEPE503
BHOH634

site_idAD3
Number of Residues11
Detailsbinding site for residue EPE B 503
ChainResidue
B3VR502
BHOH660
BHOH683
BHOH729
AGLY93
AGLY94
BTYR25
BSER27
BGLU31
BTRP64
BARG400

site_idAD4
Number of Residues8
Detailsbinding site for residue EDO B 504
ChainResidue
AARG403
AASN404
BGLN53
BILE55
BHOH687
BHOH734
BHOH809
BHOH851

site_idAD5
Number of Residues6
Detailsbinding site for residue EDO B 505
ChainResidue
BARG193
BARG230
BPHE231
BARG369
BHOH614
BHOH684

site_idAD6
Number of Residues2
Detailsbinding site for residue EDO B 506
ChainResidue
BTRP45
BGLU56

site_idAD7
Number of Residues2
Detailsbinding site for residue EDO B 507
ChainResidue
BARG193
BASP194

site_idAD8
Number of Residues25
Detailsbinding site for Di-peptide PLP B 501 and LYS B 283
ChainResidue
AGLY316
APRO317
ATHR318
APHE319
BTRP64
BTRP65
BGLY124
BSER125
BTYR157
BHIS158
BGLU220
BASP254
BILE256
BALA257
BGLY282
BALA284
BLEU285
BTHR286
B3VR502
BHOH616
BHOH669
BHOH704
BHOH708
BHOH761
BHOH817

Functional Information from PROSITE/UniProt
site_idPS00600
Number of Residues38
DetailsAA_TRANSFER_CLASS_3 Aminotransferases class-III pyridoxal-phosphate attachment site. LIfDEIat.GFgRtGalfaadhagvsp....DIMcvGKaltGG
ChainResidueDetails
ALEU251-GLY288

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:20565114
ChainResidueDetails
ATRP64
ATYR157
AGLY316
BTRP64
BTYR157
BGLY316

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00834
ChainResidueDetails
AGLY124
AASP254
ALYS283
APRO317
BGLY124
BASP254
BLYS283
BPRO317

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000305|PubMed:20565114
ChainResidueDetails
AARG400
BARG400

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: Participates in the substrate recognition with KAPA and in a stacking interaction with the adenine ring of SAM => ECO:0000305|PubMed:20565114
ChainResidueDetails
ATYR25
BTYR25

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000269|PubMed:20565114, ECO:0007744|PDB:3BV0, ECO:0007744|PDB:3LV2
ChainResidueDetails
ALYS283
BLYS283

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PDB entries from 2024-07-24

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