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4WUZ

Crystal structure of lambda exonuclease in complex with DNA and Ca2+

Functional Information from GO Data
ChainGOidnamespacecontents
A0004527molecular_functionexonuclease activity
A0006259biological_processDNA metabolic process
A0046872molecular_functionmetal ion binding
A0051908molecular_functiondouble-stranded DNA 5'-3' DNA exonuclease activity
B0004527molecular_functionexonuclease activity
B0006259biological_processDNA metabolic process
B0046872molecular_functionmetal ion binding
B0051908molecular_functiondouble-stranded DNA 5'-3' DNA exonuclease activity
C0004527molecular_functionexonuclease activity
C0006259biological_processDNA metabolic process
C0046872molecular_functionmetal ion binding
C0051908molecular_functiondouble-stranded DNA 5'-3' DNA exonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues2
Detailsbinding site for residue CA A 301
ChainResidue
AASP119
AGLU129

site_idAC2
Number of Residues8
Detailsbinding site for residue PO4 A 302
ChainResidue
AHOH440
AARG28
ATHR33
AALA34
ASER35
AALA115
ACYS116
ASER117

site_idAC3
Number of Residues5
Detailsbinding site for residue CA B 301
ChainResidue
BASP119
BGLU129
BLEU130
EDG2
EHOH103

site_idAC4
Number of Residues8
Detailsbinding site for residue PO4 C 301
ChainResidue
CARG28
CTHR33
CALA34
CSER35
CALA115
CCYS116
CSER117
CGLN157

site_idAC5
Number of Residues3
Detailsbinding site for residue CA C 302
ChainResidue
CASP119
CGLU129
CHOH463

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING:
ChainResidueDetails
AASP119
AGLU129
BASP119
BGLU129
CASP119
CGLU129

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 836
ChainResidueDetails
AGLU93metal ligand
AGLU102electrostatic stabiliser
AASP109metal ligand
AGLU129increase nucleophilicity, metal ligand, proton acceptor, proton donor
ALEU130metal ligand
ALYS131electrostatic stabiliser, proton acceptor, proton donor, proton relay

site_idMCSA2
Number of Residues6
DetailsM-CSA 836
ChainResidueDetails
BGLU93metal ligand
BGLU102electrostatic stabiliser
BASP109metal ligand
BGLU129increase nucleophilicity, metal ligand, proton acceptor, proton donor
BLEU130metal ligand
BLYS131electrostatic stabiliser, proton acceptor, proton donor, proton relay

site_idMCSA3
Number of Residues6
DetailsM-CSA 836
ChainResidueDetails
CGLU93metal ligand
CGLU102electrostatic stabiliser
CASP109metal ligand
CGLU129increase nucleophilicity, metal ligand, proton acceptor, proton donor
CLEU130metal ligand
CLYS131electrostatic stabiliser, proton acceptor, proton donor, proton relay

223790

PDB entries from 2024-08-14

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