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4WPL

Crystal structure of Mycobacterium tuberculosis uracil-DNA glycosylase in complex with uracil, Form I

Functional Information from GO Data
ChainGOidnamespacecontents
A0004844molecular_functionuracil DNA N-glycosylase activity
A0005737cellular_componentcytoplasm
A0006281biological_processDNA repair
A0006284biological_processbase-excision repair
A0016787molecular_functionhydrolase activity
A0016799molecular_functionhydrolase activity, hydrolyzing N-glycosyl compounds
A0097510biological_processbase-excision repair, AP site formation via deaminated base removal
Functional Information from PDB Data
site_idAC1
Number of Residues10
Detailsbinding site for residue URA A 301
ChainResidue
AGLN67
AHOH529
AASP68
ATYR70
ASER80
APHE81
AASN127
AHIS191
AACT305
AGOL306

site_idAC2
Number of Residues6
Detailsbinding site for residue DMS A 302
ChainResidue
AGLY39
AARG41
AGLY203
ASER204
AARG205
AARG209

site_idAC3
Number of Residues4
Detailsbinding site for residue DMS A 303
ChainResidue
AARG41
ATYR42
AGLU212
AHOH600

site_idAC4
Number of Residues5
Detailsbinding site for residue DMS A 304
ChainResidue
AGLN67
AHIS191
ASER196
ACL311
AHOH401

site_idAC5
Number of Residues7
Detailsbinding site for residue ACT A 305
ChainResidue
ATYR70
AARG92
ASER93
AURA301
AGOL306
AGOL310
AHOH405

site_idAC6
Number of Residues10
Detailsbinding site for residue GOL A 306
ChainResidue
AGLN67
AASP68
APRO71
ASER93
APRO137
AHIS191
AURA301
AACT305
AHOH421
AHOH549

site_idAC7
Number of Residues6
Detailsbinding site for residue GOL A 307
ChainResidue
AGLU19
APRO20
AALA22
AASP23
AHOH402
AHOH635

site_idAC8
Number of Residues5
Detailsbinding site for residue GOL A 308
ChainResidue
APRO108
AARG225
APRO227
AHOH455
AHOH630

site_idAC9
Number of Residues6
Detailsbinding site for residue GOL A 309
ChainResidue
AASN112
AASP114
APRO117
APRO227
AHOH444
AHOH566

site_idAD1
Number of Residues9
Detailsbinding site for residue GOL A 310
ChainResidue
AASP58
ATYR70
APRO71
ATHR72
AHIS75
APRO91
AARG92
AACT305
AHOH405

site_idAD2
Number of Residues5
Detailsbinding site for residue CL A 311
ChainResidue
AGLY169
AARG170
ADMS304
AHOH425
AHOH539

Functional Information from PROSITE/UniProt
site_idPS00130
Number of Residues10
DetailsU_DNA_GLYCOSYLASE Uracil-DNA glycosylase signature. RVLIvGQDPY
ChainResidueDetails
AARG61-TYR70

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000250
ChainResidueDetails
AASP68

226707

PDB entries from 2024-10-30

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