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4WHP

Resting Protocatechuate 3,4-dioxygenase (pseudomonas putida) at pH 6.5

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005506molecular_functioniron ion binding
A0008199molecular_functionferric iron binding
A0009056biological_processcatabolic process
A0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
A0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
A0042952biological_processbeta-ketoadipate pathway
A0051213molecular_functiondioxygenase activity
B0003824molecular_functioncatalytic activity
B0005506molecular_functioniron ion binding
B0008199molecular_functionferric iron binding
B0009056biological_processcatabolic process
B0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
B0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
B0019619biological_process3,4-dihydroxybenzoate catabolic process
B0042952biological_processbeta-ketoadipate pathway
B0046872molecular_functionmetal ion binding
B0051213molecular_functiondioxygenase activity
C0003824molecular_functioncatalytic activity
C0005506molecular_functioniron ion binding
C0008199molecular_functionferric iron binding
C0009056biological_processcatabolic process
C0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
C0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
C0042952biological_processbeta-ketoadipate pathway
C0051213molecular_functiondioxygenase activity
D0003824molecular_functioncatalytic activity
D0005506molecular_functioniron ion binding
D0008199molecular_functionferric iron binding
D0009056biological_processcatabolic process
D0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
D0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
D0019619biological_process3,4-dihydroxybenzoate catabolic process
D0042952biological_processbeta-ketoadipate pathway
D0046872molecular_functionmetal ion binding
D0051213molecular_functiondioxygenase activity
E0003824molecular_functioncatalytic activity
E0005506molecular_functioniron ion binding
E0008199molecular_functionferric iron binding
E0009056biological_processcatabolic process
E0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
E0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
E0042952biological_processbeta-ketoadipate pathway
E0051213molecular_functiondioxygenase activity
F0003824molecular_functioncatalytic activity
F0005506molecular_functioniron ion binding
F0008199molecular_functionferric iron binding
F0009056biological_processcatabolic process
F0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
F0018578molecular_functionprotocatechuate 3,4-dioxygenase activity
F0019619biological_process3,4-dihydroxybenzoate catabolic process
F0042952biological_processbeta-ketoadipate pathway
F0046872molecular_functionmetal ion binding
F0051213molecular_functiondioxygenase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue FE F 601
ChainResidue
FTYR408
FTYR447
FHIS460
FHIS462
FHOH872

site_idAC2
Number of Residues8
Detailsbinding site for residue SO4 F 602
ChainResidue
FHOH779
FHOH880
FHOH881
FHOH887
EARG133
FTYR324
FTHR326
FTRP449

site_idAC3
Number of Residues5
Detailsbinding site for residue BCT C 301
ChainResidue
CASN37
CARG38
CTHR105
CHIS107
CHOH487

site_idAC4
Number of Residues5
Detailsbinding site for residue FE D 601
ChainResidue
DTYR408
DTYR447
DHIS460
DHIS462
DHOH894

site_idAC5
Number of Residues8
Detailsbinding site for residue SO4 D 602
ChainResidue
CARG133
DTYR324
DTHR326
DTRP449
DHOH806
DHOH892
DHOH897
DHOH901

site_idAC6
Number of Residues4
Detailsbinding site for residue BME D 603
ChainResidue
DGLN503
DARG522
DPHE523
DASP524

site_idAC7
Number of Residues9
Detailsbinding site for residue SO4 B 601
ChainResidue
AARG133
BTYR324
BTHR326
BTRP449
BHOH793
BHOH891
BHOH892
BHOH893
BHOH894

site_idAC8
Number of Residues5
Detailsbinding site for residue FE B 602
ChainResidue
BTYR408
BTYR447
BHIS460
BHIS462
BHOH887

Functional Information from PROSITE/UniProt
site_idPS00083
Number of Residues29
DetailsINTRADIOL_DIOXYGENAS Intradiol ring-cleavage dioxygenases signature. VaGrVvdqyGkpVpntlVEMwqanagGrY
ChainResidueDetails
FVAL380-TYR408
BVAL380-TYR408
ALEU51-TYR79

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:7990141
ChainResidueDetails
BTYR408
BTYR447
BHIS460
BHIS462
DTYR408
DTYR447
DHIS460
DHIS462

Catalytic Information from CSA
site_idMCSA1
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
BTYR408metal ligand
BTYR447metal ligand, proton shuttle (general acid/base)
BARG457electrostatic stabiliser
BHIS460metal ligand
BHIS462metal ligand

site_idMCSA2
Number of Residues5
DetailsM-CSA 936
ChainResidueDetails
DTYR408metal ligand
DTYR447metal ligand, proton shuttle (general acid/base)
DARG457electrostatic stabiliser
DHIS460metal ligand
DHIS462metal ligand

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PDB entries from 2024-07-24

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