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4WDZ

JC Polyomavirus VP1 five-fold pore mutant N221W

Functional Information from GO Data
ChainGOidnamespacecontents
A0005198molecular_functionstructural molecule activity
A0019028cellular_componentviral capsid
B0005198molecular_functionstructural molecule activity
B0019028cellular_componentviral capsid
C0005198molecular_functionstructural molecule activity
C0019028cellular_componentviral capsid
D0005198molecular_functionstructural molecule activity
D0019028cellular_componentviral capsid
E0005198molecular_functionstructural molecule activity
E0019028cellular_componentviral capsid
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue GOL A 301
ChainResidue
APRO224
AVAL225
AGOL302
AHOH422
AHOH472
AHOH499

site_idAC2
Number of Residues8
Detailsbinding site for residue GOL A 302
ChainResidue
AHIS227
AARG276
AGOL301
AHOH516
AHOH558
AHIS142
AVAL225
ALEU226

site_idAC3
Number of Residues9
Detailsbinding site for residue GOL A 303
ChainResidue
AGLY138
ATHR139
AGLY219
AGLU220
AMET261
AHOH432
EVAL120
EGLY133
EPRO135

site_idAC4
Number of Residues8
Detailsbinding site for residue GOL A 304
ChainResidue
ASER62
ASER64
ASER69
AASP70
ASER71
AMET76
AHOH535
EHIS121

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 305
ChainResidue
AGLU38
ALYS108
ALYS279
AGLN281
AHOH575

site_idAC6
Number of Residues9
Detailsbinding site for residue GOL B 301
ChainResidue
AVAL120
ATHR127
AGLY133
APRO135
BGLY138
BTHR139
BGLY219
BGLU220
BHOH422

site_idAC7
Number of Residues8
Detailsbinding site for residue GOL B 302
ChainResidue
AHIS121
BSER62
BSER64
BSER69
BASP70
BSER71
BPRO72
BHOH405

site_idAC8
Number of Residues4
Detailsbinding site for residue EDO B 303
ChainResidue
BHIS142
BLEU226
BHIS227
BARG276

site_idAC9
Number of Residues5
Detailsbinding site for residue EDO B 304
ChainResidue
BHIS142
BPHE213
BGLY214
BTHR215
BHOH440

site_idAD1
Number of Residues8
Detailsbinding site for residue GOL C 301
ChainResidue
BHIS121
CSER62
CSER64
CSER69
CASP70
CSER71
CPRO72
CHOH557

site_idAD2
Number of Residues8
Detailsbinding site for residue GOL C 302
ChainResidue
BVAL120
BGLY133
BPRO135
CGLY138
CTHR139
CGLY219
CGLU220
CHOH411

site_idAD3
Number of Residues5
Detailsbinding site for residue EDO C 303
ChainResidue
CGLU208
CASN209
CARG211
CASP238
CGLY243

site_idAD4
Number of Residues3
Detailsbinding site for residue EDO C 304
ChainResidue
CHIS142
CGLY214
CTHR215

site_idAD5
Number of Residues7
Detailsbinding site for residue GOL D 301
ChainResidue
CHIS121
DSER62
DSER64
DSER69
DASP70
DSER71
DPRO72

site_idAD6
Number of Residues10
Detailsbinding site for residue GOL D 302
ChainResidue
ETHR139
EGLY219
EGLU220
EMET261
DVAL120
DTHR127
DGLY133
DPRO135
DHOH427
EGLY138

site_idAD7
Number of Residues6
Detailsbinding site for residue GOL D 303
ChainResidue
CVAL120
CGLY133
CPRO135
DTHR139
DGLU220
DHOH429

site_idAD8
Number of Residues8
Detailsbinding site for residue GOL D 304
ChainResidue
DHIS142
DVAL225
DLEU226
DHIS227
DARG276
DEDO305
DHOH545
DHOH549

site_idAD9
Number of Residues5
Detailsbinding site for residue EDO D 305
ChainResidue
DHIS142
DGLY214
DTHR215
DGOL304
DHOH496

site_idAE1
Number of Residues6
Detailsbinding site for residue GOL E 301
ChainResidue
EHIS142
ELEU226
EHIS227
EEDO303
EHOH560
EHOH562

site_idAE2
Number of Residues10
Detailsbinding site for residue GOL E 302
ChainResidue
BASP65
DHIS121
ESER62
ESER64
ESER69
EASP70
ESER71
EPRO72
EHOH401
EHOH403

site_idAE3
Number of Residues5
Detailsbinding site for residue EDO E 303
ChainResidue
EHIS142
EGLY214
ETHR215
EGOL301
EHOH441

Functional Information from PROSITE/UniProt
site_idPS00178
Number of Residues12
DetailsAA_TRNA_LIGASE_I Aminoacyl-transfer RNA synthetases class-I signature. PnlNEdLTCGNI
ChainResidueDetails
APRO88-ILE99

225158

PDB entries from 2024-09-18

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