Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

4V4F

The structure of the trp RNA-binding attenuation protein (TRAP) bound to a RNA molecule containing UAGAU repeats

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
AA	0003723	molecular_function	RNA binding
AA	0006351	biological_process	DNA-templated transcription
AA	0006353	biological_process	DNA-templated transcription termination
AA	0006355	biological_process	regulation of DNA-templated transcription
AB	0003723	molecular_function	RNA binding
AB	0006351	biological_process	DNA-templated transcription
AB	0006353	biological_process	DNA-templated transcription termination
AB	0006355	biological_process	regulation of DNA-templated transcription
AC	0003723	molecular_function	RNA binding
AC	0006351	biological_process	DNA-templated transcription
AC	0006353	biological_process	DNA-templated transcription termination
AC	0006355	biological_process	regulation of DNA-templated transcription
AD	0003723	molecular_function	RNA binding
AD	0006351	biological_process	DNA-templated transcription
AD	0006353	biological_process	DNA-templated transcription termination
AD	0006355	biological_process	regulation of DNA-templated transcription
AE	0003723	molecular_function	RNA binding
AE	0006351	biological_process	DNA-templated transcription
AE	0006353	biological_process	DNA-templated transcription termination
AE	0006355	biological_process	regulation of DNA-templated transcription
AF	0003723	molecular_function	RNA binding
AF	0006351	biological_process	DNA-templated transcription
AF	0006353	biological_process	DNA-templated transcription termination
AF	0006355	biological_process	regulation of DNA-templated transcription
AG	0003723	molecular_function	RNA binding
AG	0006351	biological_process	DNA-templated transcription
AG	0006353	biological_process	DNA-templated transcription termination
AG	0006355	biological_process	regulation of DNA-templated transcription
AH	0003723	molecular_function	RNA binding
AH	0006351	biological_process	DNA-templated transcription
AH	0006353	biological_process	DNA-templated transcription termination
AH	0006355	biological_process	regulation of DNA-templated transcription
AI	0003723	molecular_function	RNA binding
AI	0006351	biological_process	DNA-templated transcription
AI	0006353	biological_process	DNA-templated transcription termination
AI	0006355	biological_process	regulation of DNA-templated transcription
AJ	0003723	molecular_function	RNA binding
AJ	0006351	biological_process	DNA-templated transcription
AJ	0006353	biological_process	DNA-templated transcription termination
AJ	0006355	biological_process	regulation of DNA-templated transcription
AK	0003723	molecular_function	RNA binding
AK	0006351	biological_process	DNA-templated transcription
AK	0006353	biological_process	DNA-templated transcription termination
AK	0006355	biological_process	regulation of DNA-templated transcription
AL	0003723	molecular_function	RNA binding
AL	0006351	biological_process	DNA-templated transcription
AL	0006353	biological_process	DNA-templated transcription termination
AL	0006355	biological_process	regulation of DNA-templated transcription
AM	0003723	molecular_function	RNA binding
AM	0006351	biological_process	DNA-templated transcription
AM	0006353	biological_process	DNA-templated transcription termination
AM	0006355	biological_process	regulation of DNA-templated transcription
AN	0003723	molecular_function	RNA binding
AN	0006351	biological_process	DNA-templated transcription
AN	0006353	biological_process	DNA-templated transcription termination
AN	0006355	biological_process	regulation of DNA-templated transcription
AO	0003723	molecular_function	RNA binding
AO	0006351	biological_process	DNA-templated transcription
AO	0006353	biological_process	DNA-templated transcription termination
AO	0006355	biological_process	regulation of DNA-templated transcription
AP	0003723	molecular_function	RNA binding
AP	0006351	biological_process	DNA-templated transcription
AP	0006353	biological_process	DNA-templated transcription termination
AP	0006355	biological_process	regulation of DNA-templated transcription
AQ	0003723	molecular_function	RNA binding
AQ	0006351	biological_process	DNA-templated transcription
AQ	0006353	biological_process	DNA-templated transcription termination
AQ	0006355	biological_process	regulation of DNA-templated transcription
AR	0003723	molecular_function	RNA binding
AR	0006351	biological_process	DNA-templated transcription
AR	0006353	biological_process	DNA-templated transcription termination
AR	0006355	biological_process	regulation of DNA-templated transcription
AS	0003723	molecular_function	RNA binding
AS	0006351	biological_process	DNA-templated transcription
AS	0006353	biological_process	DNA-templated transcription termination
AS	0006355	biological_process	regulation of DNA-templated transcription
AT	0003723	molecular_function	RNA binding
AT	0006351	biological_process	DNA-templated transcription
AT	0006353	biological_process	DNA-templated transcription termination
AT	0006355	biological_process	regulation of DNA-templated transcription
AU	0003723	molecular_function	RNA binding
AU	0006351	biological_process	DNA-templated transcription
AU	0006353	biological_process	DNA-templated transcription termination
AU	0006355	biological_process	regulation of DNA-templated transcription
AV	0003723	molecular_function	RNA binding
AV	0006351	biological_process	DNA-templated transcription
AV	0006353	biological_process	DNA-templated transcription termination
AV	0006355	biological_process	regulation of DNA-templated transcription
BA	0003723	molecular_function	RNA binding
BA	0006351	biological_process	DNA-templated transcription
BA	0006353	biological_process	DNA-templated transcription termination
BA	0006355	biological_process	regulation of DNA-templated transcription
BB	0003723	molecular_function	RNA binding
BB	0006351	biological_process	DNA-templated transcription
BB	0006353	biological_process	DNA-templated transcription termination
BB	0006355	biological_process	regulation of DNA-templated transcription
BC	0003723	molecular_function	RNA binding
BC	0006351	biological_process	DNA-templated transcription
BC	0006353	biological_process	DNA-templated transcription termination
BC	0006355	biological_process	regulation of DNA-templated transcription
BD	0003723	molecular_function	RNA binding
BD	0006351	biological_process	DNA-templated transcription
BD	0006353	biological_process	DNA-templated transcription termination
BD	0006355	biological_process	regulation of DNA-templated transcription
BE	0003723	molecular_function	RNA binding
BE	0006351	biological_process	DNA-templated transcription
BE	0006353	biological_process	DNA-templated transcription termination
BE	0006355	biological_process	regulation of DNA-templated transcription
BF	0003723	molecular_function	RNA binding
BF	0006351	biological_process	DNA-templated transcription
BF	0006353	biological_process	DNA-templated transcription termination
BF	0006355	biological_process	regulation of DNA-templated transcription
BG	0003723	molecular_function	RNA binding
BG	0006351	biological_process	DNA-templated transcription
BG	0006353	biological_process	DNA-templated transcription termination
BG	0006355	biological_process	regulation of DNA-templated transcription
BH	0003723	molecular_function	RNA binding
BH	0006351	biological_process	DNA-templated transcription
BH	0006353	biological_process	DNA-templated transcription termination
BH	0006355	biological_process	regulation of DNA-templated transcription
BI	0003723	molecular_function	RNA binding
BI	0006351	biological_process	DNA-templated transcription
BI	0006353	biological_process	DNA-templated transcription termination
BI	0006355	biological_process	regulation of DNA-templated transcription
BJ	0003723	molecular_function	RNA binding
BJ	0006351	biological_process	DNA-templated transcription
BJ	0006353	biological_process	DNA-templated transcription termination
BJ	0006355	biological_process	regulation of DNA-templated transcription
BK	0003723	molecular_function	RNA binding
BK	0006351	biological_process	DNA-templated transcription
BK	0006353	biological_process	DNA-templated transcription termination
BK	0006355	biological_process	regulation of DNA-templated transcription
BL	0003723	molecular_function	RNA binding
BL	0006351	biological_process	DNA-templated transcription
BL	0006353	biological_process	DNA-templated transcription termination
BL	0006355	biological_process	regulation of DNA-templated transcription
BM	0003723	molecular_function	RNA binding
BM	0006351	biological_process	DNA-templated transcription
BM	0006353	biological_process	DNA-templated transcription termination
BM	0006355	biological_process	regulation of DNA-templated transcription
BN	0003723	molecular_function	RNA binding
BN	0006351	biological_process	DNA-templated transcription
BN	0006353	biological_process	DNA-templated transcription termination
BN	0006355	biological_process	regulation of DNA-templated transcription
BO	0003723	molecular_function	RNA binding
BO	0006351	biological_process	DNA-templated transcription
BO	0006353	biological_process	DNA-templated transcription termination
BO	0006355	biological_process	regulation of DNA-templated transcription
BP	0003723	molecular_function	RNA binding
BP	0006351	biological_process	DNA-templated transcription
BP	0006353	biological_process	DNA-templated transcription termination
BP	0006355	biological_process	regulation of DNA-templated transcription
BQ	0003723	molecular_function	RNA binding
BQ	0006351	biological_process	DNA-templated transcription
BQ	0006353	biological_process	DNA-templated transcription termination
BQ	0006355	biological_process	regulation of DNA-templated transcription
BR	0003723	molecular_function	RNA binding
BR	0006351	biological_process	DNA-templated transcription
BR	0006353	biological_process	DNA-templated transcription termination
BR	0006355	biological_process	regulation of DNA-templated transcription
BS	0003723	molecular_function	RNA binding
BS	0006351	biological_process	DNA-templated transcription
BS	0006353	biological_process	DNA-templated transcription termination
BS	0006355	biological_process	regulation of DNA-templated transcription
BT	0003723	molecular_function	RNA binding
BT	0006351	biological_process	DNA-templated transcription
BT	0006353	biological_process	DNA-templated transcription termination
BT	0006355	biological_process	regulation of DNA-templated transcription
BU	0003723	molecular_function	RNA binding
BU	0006351	biological_process	DNA-templated transcription
BU	0006353	biological_process	DNA-templated transcription termination
BU	0006355	biological_process	regulation of DNA-templated transcription
BV	0003723	molecular_function	RNA binding
BV	0006351	biological_process	DNA-templated transcription
BV	0006353	biological_process	DNA-templated transcription termination
BV	0006355	biological_process	regulation of DNA-templated transcription

Functional Information from PDB Data

site_id	AC1
Number of Residues	11
Details	binding site for residue TRP AA 101

Chain	Residue
AA	THR25
AK	THR52
AK	HOH237
AA	ARG26
AA	GLY27
AA	ASP29
AA	THR30
AA	SER53
AK	GLY23
AK	GLN47
AK	THR49

site_id	AC2
Number of Residues	11
Details	binding site for residue TRP AB 101

Chain	Residue
AA	GLY23
AA	GLN47
AA	THR49
AA	THR52
AA	HOH2044
AB	THR25
AB	ARG26
AB	GLY27
AB	ASP29
AB	THR30
AB	SER53

site_id	AC3
Number of Residues	11
Details	binding site for residue TRP AC 101

Chain	Residue
AB	GLY23
AB	GLN47
AB	THR49
AB	THR52
AB	HOH239
AC	THR25
AC	ARG26
AC	GLY27
AC	ASP29
AC	THR30
AC	SER53

site_id	AC4
Number of Residues	11
Details	binding site for residue TRP AD 101

Chain	Residue
AC	GLY23
AC	GLN47
AC	THR49
AC	THR52
AD	THR25
AD	ARG26
AD	GLY27
AD	ASP29
AD	THR30
AD	SER53
AD	HOH201

site_id	AC5
Number of Residues	11
Details	binding site for residue TRP AE 101

Chain	Residue
AD	GLY23
AD	GLN47
AD	THR49
AD	THR52
AE	THR25
AE	ARG26
AE	GLY27
AE	ASP29
AE	THR30
AE	SER53
AE	HOH201

site_id	AC6
Number of Residues	11
Details	binding site for residue TRP AF 101

Chain	Residue
AE	GLY23
AE	GLN47
AE	THR49
AE	THR52
AE	HOH233
AF	THR25
AF	ARG26
AF	GLY27
AF	ASP29
AF	THR30
AF	SER53

site_id	AC7
Number of Residues	12
Details	binding site for residue TRP AG 101

Chain	Residue
AF	GLY23
AF	ALA46
AF	GLN47
AF	THR49
AF	THR52
AG	THR25
AG	ARG26
AG	GLY27
AG	ASP29
AG	THR30
AG	SER53
AG	HOH201

site_id	AC8
Number of Residues	11
Details	binding site for residue TRP AH 101

Chain	Residue
AG	GLY23
AG	GLN47
AG	THR49
AG	THR52
AH	THR25
AH	ARG26
AH	GLY27
AH	ASP29
AH	THR30
AH	SER53
AH	HOH204

site_id	AC9
Number of Residues	10
Details	binding site for residue TRP AI 101

Chain	Residue
AH	GLY23
AH	GLN47
AH	THR49
AH	THR52
AI	THR25
AI	ARG26
AI	GLY27
AI	ASP29
AI	THR30
AI	SER53

site_id	AD1
Number of Residues	11
Details	binding site for residue TRP AJ 101

Chain	Residue
AI	GLY23
AI	GLN47
AI	THR49
AI	THR52
AI	HOH244
AJ	THR25
AJ	ARG26
AJ	GLY27
AJ	ASP29
AJ	THR30
AJ	SER53

site_id	AD2
Number of Residues	12
Details	binding site for residue TRP AK 101

Chain	Residue
AJ	GLY23
AJ	ALA46
AJ	GLN47
AJ	THR49
AJ	THR52
AJ	HOH243
AK	THR25
AK	ARG26
AK	GLY27
AK	ASP29
AK	THR30
AK	SER53

site_id	AD3
Number of Residues	11
Details	binding site for residue TRP AL 301

Chain	Residue
AL	THR225
AL	ARG226
AL	GLY227
AL	ASP229
AL	THR230
AL	SER253
AV	GLY223
AV	GLN247
AV	THR249
AV	THR252
AV	HOH444

site_id	AD4
Number of Residues	11
Details	binding site for residue TRP AM 301

Chain	Residue
AL	GLY223
AL	GLN247
AL	THR249
AL	THR252
AL	HOH2147
AM	THR225
AM	ARG226
AM	GLY227
AM	ASP229
AM	THR230
AM	SER253

site_id	AD5
Number of Residues	11
Details	binding site for residue TRP AN 301

Chain	Residue
AM	GLY223
AM	GLN247
AM	THR249
AM	THR252
AN	THR225
AN	ARG226
AN	GLY227
AN	ASP229
AN	THR230
AN	SER253
AN	HOH403

site_id	AD6
Number of Residues	11
Details	binding site for residue TRP AO 301

Chain	Residue
AN	GLY223
AN	GLN247
AN	THR249
AN	THR252
AO	THR225
AO	ARG226
AO	GLY227
AO	ASP229
AO	THR230
AO	SER253
AO	HOH2001

site_id	AD7
Number of Residues	11
Details	binding site for residue TRP AP 301

Chain	Residue
AO	GLY223
AO	GLN247
AO	THR249
AO	THR252
AO	HOH2049
AP	THR225
AP	ARG226
AP	GLY227
AP	ASP229
AP	THR230
AP	SER253

site_id	AD8
Number of Residues	11
Details	binding site for residue TRP AQ 301

Chain	Residue
AP	GLY223
AP	GLN247
AP	THR249
AP	THR252
AQ	THR225
AQ	ARG226
AQ	GLY227
AQ	ASP229
AQ	THR230
AQ	SER253
AQ	HOH2001

site_id	AD9
Number of Residues	11
Details	binding site for residue TRP AR 301

Chain	Residue
AQ	GLY223
AQ	GLN247
AQ	THR249
AQ	THR252
AR	THR225
AR	ARG226
AR	GLY227
AR	ASP229
AR	THR230
AR	SER253
AR	HOH2001

site_id	AE1
Number of Residues	11
Details	binding site for residue TRP AS 301

Chain	Residue
AR	GLY223
AR	GLN247
AR	THR249
AR	THR252
AS	THR225
AS	ARG226
AS	GLY227
AS	ASP229
AS	THR230
AS	SER253
AS	HOH404

site_id	AE2
Number of Residues	11
Details	binding site for residue TRP AT 301

Chain	Residue
AS	GLY223
AS	GLN247
AS	THR249
AS	THR252
AS	HOH457
AT	THR225
AT	ARG226
AT	GLY227
AT	ASP229
AT	THR230
AT	SER253

site_id	AE3
Number of Residues	11
Details	binding site for residue TRP AU 301

Chain	Residue
AT	GLY223
AT	GLN247
AT	THR249
AT	THR252
AT	HOH453
AU	THR225
AU	ARG226
AU	GLY227
AU	ASP229
AU	THR230
AU	SER253

site_id	AE4
Number of Residues	11
Details	binding site for residue TRP AV 301

Chain	Residue
AU	GLY223
AU	GLN247
AU	THR249
AU	THR252
AU	HOH460
AV	THR225
AV	ARG226
AV	GLY227
AV	ASP229
AV	THR230
AV	SER253

site_id	AE5
Number of Residues	12
Details	binding site for residue TRP BA 101

Chain	Residue
BA	THR25
BA	ARG26
BA	GLY27
BA	ASP29
BA	THR30
BA	SER53
BA	HOH266
BK	GLY23
BK	ALA46
BK	GLN47
BK	THR49
BK	THR52

site_id	AE6
Number of Residues	12
Details	binding site for residue TRP BB 101

Chain	Residue
BA	GLY23
BA	ALA46
BA	GLN47
BA	THR49
BA	THR52
BB	THR25
BB	ARG26
BB	GLY27
BB	ASP29
BB	THR30
BB	SER53
BB	HOH205

site_id	AE7
Number of Residues	12
Details	binding site for residue TRP BC 101

Chain	Residue
BB	GLY23
BB	ALA46
BB	GLN47
BB	THR49
BB	THR52
BB	HOH241
BC	THR25
BC	ARG26
BC	GLY27
BC	ASP29
BC	THR30
BC	SER53

site_id	AE8
Number of Residues	12
Details	binding site for residue TRP BD 101

Chain	Residue
BC	GLY23
BC	ALA46
BC	GLN47
BC	THR49
BC	THR52
BC	HOH242
BD	THR25
BD	ARG26
BD	GLY27
BD	ASP29
BD	THR30
BD	SER53

site_id	AE9
Number of Residues	12
Details	binding site for residue TRP BE 101

Chain	Residue
BD	GLY23
BD	ALA46
BD	GLN47
BD	THR49
BD	THR52
BD	HOH245
BE	THR25
BE	ARG26
BE	GLY27
BE	ASP29
BE	THR30
BE	SER53

site_id	AF1
Number of Residues	11
Details	binding site for residue TRP BF 101

Chain	Residue
BE	GLY23
BE	GLN47
BE	THR49
BE	THR52
BF	THR25
BF	ARG26
BF	GLY27
BF	ASP29
BF	THR30
BF	SER53
BF	HOH205

site_id	AF2
Number of Residues	11
Details	binding site for residue TRP BG 101

Chain	Residue
BF	GLY23
BF	GLN47
BF	THR49
BF	THR52
BF	HOH235
BG	THR25
BG	ARG26
BG	GLY27
BG	ASP29
BG	THR30
BG	SER53

site_id	AF3
Number of Residues	12
Details	binding site for residue TRP BH 101

Chain	Residue
BG	GLY23
BG	ALA46
BG	GLN47
BG	THR49
BG	THR52
BG	HOH238
BH	THR25
BH	ARG26
BH	GLY27
BH	ASP29
BH	THR30
BH	SER53

site_id	AF4
Number of Residues	12
Details	binding site for residue TRP BI 101

Chain	Residue
BH	GLY23
BH	ALA46
BH	GLN47
BH	THR49
BH	THR52
BH	HOH245
BI	THR25
BI	ARG26
BI	GLY27
BI	ASP29
BI	THR30
BI	SER53

site_id	AF5
Number of Residues	12
Details	binding site for residue TRP BJ 101

Chain	Residue
BI	GLY23
BI	ALA46
BI	GLN47
BI	THR49
BI	THR52
BI	HOH248
BJ	THR25
BJ	ARG26
BJ	GLY27
BJ	ASP29
BJ	THR30
BJ	SER53

site_id	AF6
Number of Residues	11
Details	binding site for residue TRP BK 101

Chain	Residue
BJ	GLY23
BJ	GLN47
BJ	THR49
BJ	THR52
BJ	HOH247
BK	THR25
BK	ARG26
BK	GLY27
BK	ASP29
BK	THR30
BK	SER53

site_id	AF7
Number of Residues	10
Details	binding site for residue TRP BL 101

Chain	Residue
BL	THR25
BL	GLY27
BL	ASP29
BL	THR30
BL	SER53
BV	GLY23
BV	ALA46
BV	GLN47
BV	THR49
BV	THR52

site_id	AF8
Number of Residues	10
Details	binding site for residue TRP BM 101

Chain	Residue
BL	GLY23
BL	GLN47
BL	THR49
BL	THR52
BM	THR25
BM	ARG26
BM	GLY27
BM	ASP29
BM	THR30
BM	SER53

site_id	AF9
Number of Residues	11
Details	binding site for residue TRP BN 101

Chain	Residue
BM	GLY23
BM	GLN47
BM	THR49
BM	THR52
BM	HOH242
BN	THR25
BN	ARG26
BN	GLY27
BN	ASP29
BN	THR30
BN	SER53

site_id	AG1
Number of Residues	10
Details	binding site for residue TRP BO 101

Chain	Residue
BN	GLY23
BN	GLN47
BN	THR49
BN	THR52
BO	THR25
BO	ARG26
BO	GLY27
BO	ASP29
BO	THR30
BO	SER53

site_id	AG2
Number of Residues	10
Details	binding site for residue TRP BP 101

Chain	Residue
BO	GLY23
BO	GLN47
BO	THR49
BO	THR52
BP	THR25
BP	ARG26
BP	GLY27
BP	ASP29
BP	THR30
BP	SER53

site_id	AG3
Number of Residues	11
Details	binding site for residue TRP BQ 101

Chain	Residue
BP	GLY23
BP	GLN47
BP	THR49
BP	THR52
BP	HOH235
BQ	THR25
BQ	ARG26
BQ	GLY27
BQ	ASP29
BQ	THR30
BQ	SER53

site_id	AG4
Number of Residues	10
Details	binding site for residue TRP BR 101

Chain	Residue
BQ	GLY23
BQ	GLN47
BQ	THR49
BQ	THR52
BR	THR25
BR	ARG26
BR	GLY27
BR	ASP29
BR	THR30
BR	SER53

site_id	AG5
Number of Residues	10
Details	binding site for residue TRP BS 101

Chain	Residue
BR	GLY23
BR	GLN47
BR	THR49
BR	THR52
BS	THR25
BS	ARG26
BS	GLY27
BS	ASP29
BS	THR30
BS	SER53

site_id	AG6
Number of Residues	11
Details	binding site for residue TRP BT 101

Chain	Residue
BS	GLY23
BS	GLN47
BS	THR49
BS	THR52
BT	THR25
BT	ARG26
BT	GLY27
BT	ASP29
BT	THR30
BT	SER53
BT	HOH203

site_id	AG7
Number of Residues	11
Details	binding site for residue TRP BU 101

Chain	Residue
BT	GLY23
BT	GLN47
BT	THR49
BT	THR52
BT	HOH253
BU	THR25
BU	ARG26
BU	GLY27
BU	ASP29
BU	THR30
BU	SER53

site_id	AG8
Number of Residues	12
Details	binding site for residue TRP BV 101

Chain	Residue
BU	GLY23
BU	ALA46
BU	GLN47
BU	THR49
BU	THR52
BU	HOH241
BV	THR25
BV	ARG26
BV	GLY27
BV	ASP29
BV	THR30
BV	SER53

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)