Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4V4F

The structure of the trp RNA-binding attenuation protein (TRAP) bound to a RNA molecule containing UAGAU repeats

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
AA0003723molecular_functionRNA binding
AA0005515molecular_functionprotein binding
AA0006353biological_processDNA-templated transcription termination
AA0006355biological_processregulation of DNA-templated transcription
AA0042802molecular_functionidentical protein binding
AB0003723molecular_functionRNA binding
AB0005515molecular_functionprotein binding
AB0006353biological_processDNA-templated transcription termination
AB0006355biological_processregulation of DNA-templated transcription
AB0042802molecular_functionidentical protein binding
AC0003723molecular_functionRNA binding
AC0005515molecular_functionprotein binding
AC0006353biological_processDNA-templated transcription termination
AC0006355biological_processregulation of DNA-templated transcription
AC0042802molecular_functionidentical protein binding
AD0003723molecular_functionRNA binding
AD0005515molecular_functionprotein binding
AD0006353biological_processDNA-templated transcription termination
AD0006355biological_processregulation of DNA-templated transcription
AD0042802molecular_functionidentical protein binding
AE0003723molecular_functionRNA binding
AE0005515molecular_functionprotein binding
AE0006353biological_processDNA-templated transcription termination
AE0006355biological_processregulation of DNA-templated transcription
AE0042802molecular_functionidentical protein binding
AF0003723molecular_functionRNA binding
AF0005515molecular_functionprotein binding
AF0006353biological_processDNA-templated transcription termination
AF0006355biological_processregulation of DNA-templated transcription
AF0042802molecular_functionidentical protein binding
AG0003723molecular_functionRNA binding
AG0005515molecular_functionprotein binding
AG0006353biological_processDNA-templated transcription termination
AG0006355biological_processregulation of DNA-templated transcription
AG0042802molecular_functionidentical protein binding
AH0003723molecular_functionRNA binding
AH0005515molecular_functionprotein binding
AH0006353biological_processDNA-templated transcription termination
AH0006355biological_processregulation of DNA-templated transcription
AH0042802molecular_functionidentical protein binding
AI0003723molecular_functionRNA binding
AI0005515molecular_functionprotein binding
AI0006353biological_processDNA-templated transcription termination
AI0006355biological_processregulation of DNA-templated transcription
AI0042802molecular_functionidentical protein binding
AJ0003723molecular_functionRNA binding
AJ0005515molecular_functionprotein binding
AJ0006353biological_processDNA-templated transcription termination
AJ0006355biological_processregulation of DNA-templated transcription
AJ0042802molecular_functionidentical protein binding
AK0003723molecular_functionRNA binding
AK0005515molecular_functionprotein binding
AK0006353biological_processDNA-templated transcription termination
AK0006355biological_processregulation of DNA-templated transcription
AK0042802molecular_functionidentical protein binding
AL0003723molecular_functionRNA binding
AL0005515molecular_functionprotein binding
AL0006353biological_processDNA-templated transcription termination
AL0006355biological_processregulation of DNA-templated transcription
AL0042802molecular_functionidentical protein binding
AM0003723molecular_functionRNA binding
AM0005515molecular_functionprotein binding
AM0006353biological_processDNA-templated transcription termination
AM0006355biological_processregulation of DNA-templated transcription
AM0042802molecular_functionidentical protein binding
AN0003723molecular_functionRNA binding
AN0005515molecular_functionprotein binding
AN0006353biological_processDNA-templated transcription termination
AN0006355biological_processregulation of DNA-templated transcription
AN0042802molecular_functionidentical protein binding
AO0003723molecular_functionRNA binding
AO0005515molecular_functionprotein binding
AO0006353biological_processDNA-templated transcription termination
AO0006355biological_processregulation of DNA-templated transcription
AO0042802molecular_functionidentical protein binding
AP0003723molecular_functionRNA binding
AP0005515molecular_functionprotein binding
AP0006353biological_processDNA-templated transcription termination
AP0006355biological_processregulation of DNA-templated transcription
AP0042802molecular_functionidentical protein binding
AQ0003723molecular_functionRNA binding
AQ0005515molecular_functionprotein binding
AQ0006353biological_processDNA-templated transcription termination
AQ0006355biological_processregulation of DNA-templated transcription
AQ0042802molecular_functionidentical protein binding
AR0003723molecular_functionRNA binding
AR0005515molecular_functionprotein binding
AR0006353biological_processDNA-templated transcription termination
AR0006355biological_processregulation of DNA-templated transcription
AR0042802molecular_functionidentical protein binding
AS0003723molecular_functionRNA binding
AS0005515molecular_functionprotein binding
AS0006353biological_processDNA-templated transcription termination
AS0006355biological_processregulation of DNA-templated transcription
AS0042802molecular_functionidentical protein binding
AT0003723molecular_functionRNA binding
AT0005515molecular_functionprotein binding
AT0006353biological_processDNA-templated transcription termination
AT0006355biological_processregulation of DNA-templated transcription
AT0042802molecular_functionidentical protein binding
AU0003723molecular_functionRNA binding
AU0005515molecular_functionprotein binding
AU0006353biological_processDNA-templated transcription termination
AU0006355biological_processregulation of DNA-templated transcription
AU0042802molecular_functionidentical protein binding
AV0003723molecular_functionRNA binding
AV0005515molecular_functionprotein binding
AV0006353biological_processDNA-templated transcription termination
AV0006355biological_processregulation of DNA-templated transcription
AV0042802molecular_functionidentical protein binding
BA0003723molecular_functionRNA binding
BA0005515molecular_functionprotein binding
BA0006353biological_processDNA-templated transcription termination
BA0006355biological_processregulation of DNA-templated transcription
BA0042802molecular_functionidentical protein binding
BB0003723molecular_functionRNA binding
BB0005515molecular_functionprotein binding
BB0006353biological_processDNA-templated transcription termination
BB0006355biological_processregulation of DNA-templated transcription
BB0042802molecular_functionidentical protein binding
BC0003723molecular_functionRNA binding
BC0005515molecular_functionprotein binding
BC0006353biological_processDNA-templated transcription termination
BC0006355biological_processregulation of DNA-templated transcription
BC0042802molecular_functionidentical protein binding
BD0003723molecular_functionRNA binding
BD0005515molecular_functionprotein binding
BD0006353biological_processDNA-templated transcription termination
BD0006355biological_processregulation of DNA-templated transcription
BD0042802molecular_functionidentical protein binding
BE0003723molecular_functionRNA binding
BE0005515molecular_functionprotein binding
BE0006353biological_processDNA-templated transcription termination
BE0006355biological_processregulation of DNA-templated transcription
BE0042802molecular_functionidentical protein binding
BF0003723molecular_functionRNA binding
BF0005515molecular_functionprotein binding
BF0006353biological_processDNA-templated transcription termination
BF0006355biological_processregulation of DNA-templated transcription
BF0042802molecular_functionidentical protein binding
BG0003723molecular_functionRNA binding
BG0005515molecular_functionprotein binding
BG0006353biological_processDNA-templated transcription termination
BG0006355biological_processregulation of DNA-templated transcription
BG0042802molecular_functionidentical protein binding
BH0003723molecular_functionRNA binding
BH0005515molecular_functionprotein binding
BH0006353biological_processDNA-templated transcription termination
BH0006355biological_processregulation of DNA-templated transcription
BH0042802molecular_functionidentical protein binding
BI0003723molecular_functionRNA binding
BI0005515molecular_functionprotein binding
BI0006353biological_processDNA-templated transcription termination
BI0006355biological_processregulation of DNA-templated transcription
BI0042802molecular_functionidentical protein binding
BJ0003723molecular_functionRNA binding
BJ0005515molecular_functionprotein binding
BJ0006353biological_processDNA-templated transcription termination
BJ0006355biological_processregulation of DNA-templated transcription
BJ0042802molecular_functionidentical protein binding
BK0003723molecular_functionRNA binding
BK0005515molecular_functionprotein binding
BK0006353biological_processDNA-templated transcription termination
BK0006355biological_processregulation of DNA-templated transcription
BK0042802molecular_functionidentical protein binding
BL0003723molecular_functionRNA binding
BL0005515molecular_functionprotein binding
BL0006353biological_processDNA-templated transcription termination
BL0006355biological_processregulation of DNA-templated transcription
BL0042802molecular_functionidentical protein binding
BM0003723molecular_functionRNA binding
BM0005515molecular_functionprotein binding
BM0006353biological_processDNA-templated transcription termination
BM0006355biological_processregulation of DNA-templated transcription
BM0042802molecular_functionidentical protein binding
BN0003723molecular_functionRNA binding
BN0005515molecular_functionprotein binding
BN0006353biological_processDNA-templated transcription termination
BN0006355biological_processregulation of DNA-templated transcription
BN0042802molecular_functionidentical protein binding
BO0003723molecular_functionRNA binding
BO0005515molecular_functionprotein binding
BO0006353biological_processDNA-templated transcription termination
BO0006355biological_processregulation of DNA-templated transcription
BO0042802molecular_functionidentical protein binding
BP0003723molecular_functionRNA binding
BP0005515molecular_functionprotein binding
BP0006353biological_processDNA-templated transcription termination
BP0006355biological_processregulation of DNA-templated transcription
BP0042802molecular_functionidentical protein binding
BQ0003723molecular_functionRNA binding
BQ0005515molecular_functionprotein binding
BQ0006353biological_processDNA-templated transcription termination
BQ0006355biological_processregulation of DNA-templated transcription
BQ0042802molecular_functionidentical protein binding
BR0003723molecular_functionRNA binding
BR0005515molecular_functionprotein binding
BR0006353biological_processDNA-templated transcription termination
BR0006355biological_processregulation of DNA-templated transcription
BR0042802molecular_functionidentical protein binding
BS0003723molecular_functionRNA binding
BS0005515molecular_functionprotein binding
BS0006353biological_processDNA-templated transcription termination
BS0006355biological_processregulation of DNA-templated transcription
BS0042802molecular_functionidentical protein binding
BT0003723molecular_functionRNA binding
BT0005515molecular_functionprotein binding
BT0006353biological_processDNA-templated transcription termination
BT0006355biological_processregulation of DNA-templated transcription
BT0042802molecular_functionidentical protein binding
BU0003723molecular_functionRNA binding
BU0005515molecular_functionprotein binding
BU0006353biological_processDNA-templated transcription termination
BU0006355biological_processregulation of DNA-templated transcription
BU0042802molecular_functionidentical protein binding
BV0003723molecular_functionRNA binding
BV0005515molecular_functionprotein binding
BV0006353biological_processDNA-templated transcription termination
BV0006355biological_processregulation of DNA-templated transcription
BV0042802molecular_functionidentical protein binding
Functional Information from PDB Data
site_idAC1
Number of Residues11
Detailsbinding site for residue TRP AA 101
ChainResidue
AATHR25
AKTHR52
AKHOH237
AAARG26
AAGLY27
AAASP29
AATHR30
AASER53
AKGLY23
AKGLN47
AKTHR49

site_idAC2
Number of Residues11
Detailsbinding site for residue TRP AB 101
ChainResidue
AAGLY23
AAGLN47
AATHR49
AATHR52
AAHOH2044
ABTHR25
ABARG26
ABGLY27
ABASP29
ABTHR30
ABSER53

site_idAC3
Number of Residues11
Detailsbinding site for residue TRP AC 101
ChainResidue
ABGLY23
ABGLN47
ABTHR49
ABTHR52
ABHOH239
ACTHR25
ACARG26
ACGLY27
ACASP29
ACTHR30
ACSER53

site_idAC4
Number of Residues11
Detailsbinding site for residue TRP AD 101
ChainResidue
ACGLY23
ACGLN47
ACTHR49
ACTHR52
ADTHR25
ADARG26
ADGLY27
ADASP29
ADTHR30
ADSER53
ADHOH201

site_idAC5
Number of Residues11
Detailsbinding site for residue TRP AE 101
ChainResidue
ADGLY23
ADGLN47
ADTHR49
ADTHR52
AETHR25
AEARG26
AEGLY27
AEASP29
AETHR30
AESER53
AEHOH201

site_idAC6
Number of Residues11
Detailsbinding site for residue TRP AF 101
ChainResidue
AEGLY23
AEGLN47
AETHR49
AETHR52
AEHOH233
AFTHR25
AFARG26
AFGLY27
AFASP29
AFTHR30
AFSER53

site_idAC7
Number of Residues12
Detailsbinding site for residue TRP AG 101
ChainResidue
AFGLY23
AFALA46
AFGLN47
AFTHR49
AFTHR52
AGTHR25
AGARG26
AGGLY27
AGASP29
AGTHR30
AGSER53
AGHOH201

site_idAC8
Number of Residues11
Detailsbinding site for residue TRP AH 101
ChainResidue
AGGLY23
AGGLN47
AGTHR49
AGTHR52
AHTHR25
AHARG26
AHGLY27
AHASP29
AHTHR30
AHSER53
AHHOH204

site_idAC9
Number of Residues10
Detailsbinding site for residue TRP AI 101
ChainResidue
AHGLY23
AHGLN47
AHTHR49
AHTHR52
AITHR25
AIARG26
AIGLY27
AIASP29
AITHR30
AISER53

site_idAD1
Number of Residues11
Detailsbinding site for residue TRP AJ 101
ChainResidue
AIGLY23
AIGLN47
AITHR49
AITHR52
AIHOH244
AJTHR25
AJARG26
AJGLY27
AJASP29
AJTHR30
AJSER53

site_idAD2
Number of Residues12
Detailsbinding site for residue TRP AK 101
ChainResidue
AJGLY23
AJALA46
AJGLN47
AJTHR49
AJTHR52
AJHOH243
AKTHR25
AKARG26
AKGLY27
AKASP29
AKTHR30
AKSER53

site_idAD3
Number of Residues11
Detailsbinding site for residue TRP AL 301
ChainResidue
ALTHR225
ALARG226
ALGLY227
ALASP229
ALTHR230
ALSER253
AVGLY223
AVGLN247
AVTHR249
AVTHR252
AVHOH444

site_idAD4
Number of Residues11
Detailsbinding site for residue TRP AM 301
ChainResidue
ALGLY223
ALGLN247
ALTHR249
ALTHR252
ALHOH2147
AMTHR225
AMARG226
AMGLY227
AMASP229
AMTHR230
AMSER253

site_idAD5
Number of Residues11
Detailsbinding site for residue TRP AN 301
ChainResidue
AMGLY223
AMGLN247
AMTHR249
AMTHR252
ANTHR225
ANARG226
ANGLY227
ANASP229
ANTHR230
ANSER253
ANHOH403

site_idAD6
Number of Residues11
Detailsbinding site for residue TRP AO 301
ChainResidue
ANGLY223
ANGLN247
ANTHR249
ANTHR252
AOTHR225
AOARG226
AOGLY227
AOASP229
AOTHR230
AOSER253
AOHOH2001

site_idAD7
Number of Residues11
Detailsbinding site for residue TRP AP 301
ChainResidue
AOGLY223
AOGLN247
AOTHR249
AOTHR252
AOHOH2049
APTHR225
APARG226
APGLY227
APASP229
APTHR230
APSER253

site_idAD8
Number of Residues11
Detailsbinding site for residue TRP AQ 301
ChainResidue
APGLY223
APGLN247
APTHR249
APTHR252
AQTHR225
AQARG226
AQGLY227
AQASP229
AQTHR230
AQSER253
AQHOH2001

site_idAD9
Number of Residues11
Detailsbinding site for residue TRP AR 301
ChainResidue
AQGLY223
AQGLN247
AQTHR249
AQTHR252
ARTHR225
ARARG226
ARGLY227
ARASP229
ARTHR230
ARSER253
ARHOH2001

site_idAE1
Number of Residues11
Detailsbinding site for residue TRP AS 301
ChainResidue
ARGLY223
ARGLN247
ARTHR249
ARTHR252
ASTHR225
ASARG226
ASGLY227
ASASP229
ASTHR230
ASSER253
ASHOH404

site_idAE2
Number of Residues11
Detailsbinding site for residue TRP AT 301
ChainResidue
ASGLY223
ASGLN247
ASTHR249
ASTHR252
ASHOH457
ATTHR225
ATARG226
ATGLY227
ATASP229
ATTHR230
ATSER253

site_idAE3
Number of Residues11
Detailsbinding site for residue TRP AU 301
ChainResidue
ATGLY223
ATGLN247
ATTHR249
ATTHR252
ATHOH453
AUTHR225
AUARG226
AUGLY227
AUASP229
AUTHR230
AUSER253

site_idAE4
Number of Residues11
Detailsbinding site for residue TRP AV 301
ChainResidue
AUGLY223
AUGLN247
AUTHR249
AUTHR252
AUHOH460
AVTHR225
AVARG226
AVGLY227
AVASP229
AVTHR230
AVSER253

site_idAE5
Number of Residues12
Detailsbinding site for residue TRP BA 101
ChainResidue
BATHR25
BAARG26
BAGLY27
BAASP29
BATHR30
BASER53
BAHOH266
BKGLY23
BKALA46
BKGLN47
BKTHR49
BKTHR52

site_idAE6
Number of Residues12
Detailsbinding site for residue TRP BB 101
ChainResidue
BAGLY23
BAALA46
BAGLN47
BATHR49
BATHR52
BBTHR25
BBARG26
BBGLY27
BBASP29
BBTHR30
BBSER53
BBHOH205

site_idAE7
Number of Residues12
Detailsbinding site for residue TRP BC 101
ChainResidue
BBGLY23
BBALA46
BBGLN47
BBTHR49
BBTHR52
BBHOH241
BCTHR25
BCARG26
BCGLY27
BCASP29
BCTHR30
BCSER53

site_idAE8
Number of Residues12
Detailsbinding site for residue TRP BD 101
ChainResidue
BCGLY23
BCALA46
BCGLN47
BCTHR49
BCTHR52
BCHOH242
BDTHR25
BDARG26
BDGLY27
BDASP29
BDTHR30
BDSER53

site_idAE9
Number of Residues12
Detailsbinding site for residue TRP BE 101
ChainResidue
BDGLY23
BDALA46
BDGLN47
BDTHR49
BDTHR52
BDHOH245
BETHR25
BEARG26
BEGLY27
BEASP29
BETHR30
BESER53

site_idAF1
Number of Residues11
Detailsbinding site for residue TRP BF 101
ChainResidue
BEGLY23
BEGLN47
BETHR49
BETHR52
BFTHR25
BFARG26
BFGLY27
BFASP29
BFTHR30
BFSER53
BFHOH205

site_idAF2
Number of Residues11
Detailsbinding site for residue TRP BG 101
ChainResidue
BFGLY23
BFGLN47
BFTHR49
BFTHR52
BFHOH235
BGTHR25
BGARG26
BGGLY27
BGASP29
BGTHR30
BGSER53

site_idAF3
Number of Residues12
Detailsbinding site for residue TRP BH 101
ChainResidue
BGGLY23
BGALA46
BGGLN47
BGTHR49
BGTHR52
BGHOH238
BHTHR25
BHARG26
BHGLY27
BHASP29
BHTHR30
BHSER53

site_idAF4
Number of Residues12
Detailsbinding site for residue TRP BI 101
ChainResidue
BHGLY23
BHALA46
BHGLN47
BHTHR49
BHTHR52
BHHOH245
BITHR25
BIARG26
BIGLY27
BIASP29
BITHR30
BISER53

site_idAF5
Number of Residues12
Detailsbinding site for residue TRP BJ 101
ChainResidue
BIGLY23
BIALA46
BIGLN47
BITHR49
BITHR52
BIHOH248
BJTHR25
BJARG26
BJGLY27
BJASP29
BJTHR30
BJSER53

site_idAF6
Number of Residues11
Detailsbinding site for residue TRP BK 101
ChainResidue
BJGLY23
BJGLN47
BJTHR49
BJTHR52
BJHOH247
BKTHR25
BKARG26
BKGLY27
BKASP29
BKTHR30
BKSER53

site_idAF7
Number of Residues10
Detailsbinding site for residue TRP BL 101
ChainResidue
BLTHR25
BLGLY27
BLASP29
BLTHR30
BLSER53
BVGLY23
BVALA46
BVGLN47
BVTHR49
BVTHR52

site_idAF8
Number of Residues10
Detailsbinding site for residue TRP BM 101
ChainResidue
BLGLY23
BLGLN47
BLTHR49
BLTHR52
BMTHR25
BMARG26
BMGLY27
BMASP29
BMTHR30
BMSER53

site_idAF9
Number of Residues11
Detailsbinding site for residue TRP BN 101
ChainResidue
BMGLY23
BMGLN47
BMTHR49
BMTHR52
BMHOH242
BNTHR25
BNARG26
BNGLY27
BNASP29
BNTHR30
BNSER53

site_idAG1
Number of Residues10
Detailsbinding site for residue TRP BO 101
ChainResidue
BNGLY23
BNGLN47
BNTHR49
BNTHR52
BOTHR25
BOARG26
BOGLY27
BOASP29
BOTHR30
BOSER53

site_idAG2
Number of Residues10
Detailsbinding site for residue TRP BP 101
ChainResidue
BOGLY23
BOGLN47
BOTHR49
BOTHR52
BPTHR25
BPARG26
BPGLY27
BPASP29
BPTHR30
BPSER53

site_idAG3
Number of Residues11
Detailsbinding site for residue TRP BQ 101
ChainResidue
BPGLY23
BPGLN47
BPTHR49
BPTHR52
BPHOH235
BQTHR25
BQARG26
BQGLY27
BQASP29
BQTHR30
BQSER53

site_idAG4
Number of Residues10
Detailsbinding site for residue TRP BR 101
ChainResidue
BQGLY23
BQGLN47
BQTHR49
BQTHR52
BRTHR25
BRARG26
BRGLY27
BRASP29
BRTHR30
BRSER53

site_idAG5
Number of Residues10
Detailsbinding site for residue TRP BS 101
ChainResidue
BRGLY23
BRGLN47
BRTHR49
BRTHR52
BSTHR25
BSARG26
BSGLY27
BSASP29
BSTHR30
BSSER53

site_idAG6
Number of Residues11
Detailsbinding site for residue TRP BT 101
ChainResidue
BSGLY23
BSGLN47
BSTHR49
BSTHR52
BTTHR25
BTARG26
BTGLY27
BTASP29
BTTHR30
BTSER53
BTHOH203

site_idAG7
Number of Residues11
Detailsbinding site for residue TRP BU 101
ChainResidue
BTGLY23
BTGLN47
BTTHR49
BTTHR52
BTHOH253
BUTHR25
BUARG26
BUGLY27
BUASP29
BUTHR30
BUSER53

site_idAG8
Number of Residues12
Detailsbinding site for residue TRP BV 101
ChainResidue
BUGLY23
BUALA46
BUGLN47
BUTHR49
BUTHR52
BUHOH241
BVTHR25
BVARG26
BVGLY27
BVASP29
BVTHR30
BVSER53

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon