| Chain | GOid | namespace | contents |
| A | 0000775 | cellular_component | chromosome, centromeric region |
| A | 0000776 | cellular_component | kinetochore |
| A | 0000781 | cellular_component | chromosome, telomeric region |
| A | 0001824 | biological_process | blastocyst development |
| A | 0004721 | molecular_function | phosphoprotein phosphatase activity |
| A | 0004722 | molecular_function | protein serine/threonine phosphatase activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0005521 | molecular_function | lamin binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005654 | cellular_component | nucleoplasm |
| A | 0005694 | cellular_component | chromosome |
| A | 0005730 | cellular_component | nucleolus |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005739 | cellular_component | mitochondrion |
| A | 0005741 | cellular_component | mitochondrial outer membrane |
| A | 0005815 | cellular_component | microtubule organizing center |
| A | 0005856 | cellular_component | cytoskeleton |
| A | 0005977 | biological_process | glycogen metabolic process |
| A | 0006470 | biological_process | protein dephosphorylation |
| A | 0007283 | biological_process | spermatogenesis |
| A | 0008157 | molecular_function | protein phosphatase 1 binding |
| A | 0016607 | cellular_component | nuclear speck |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0016791 | molecular_function | phosphatase activity |
| A | 0017018 | molecular_function | myosin phosphatase activity |
| A | 0019901 | molecular_function | protein kinase binding |
| A | 0019903 | molecular_function | protein phosphatase binding |
| A | 0019904 | molecular_function | protein domain specific binding |
| A | 0030182 | biological_process | neuron differentiation |
| A | 0030496 | cellular_component | midbody |
| A | 0032154 | cellular_component | cleavage furrow |
| A | 0032922 | biological_process | circadian regulation of gene expression |
| A | 0032991 | cellular_component | protein-containing complex |
| A | 0042752 | biological_process | regulation of circadian rhythm |
| A | 0043153 | biological_process | entrainment of circadian clock by photoperiod |
| A | 0043197 | cellular_component | dendritic spine |
| A | 0044877 | molecular_function | protein-containing complex binding |
| A | 0046822 | biological_process | regulation of nucleocytoplasmic transport |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0048511 | biological_process | rhythmic process |
| A | 0051301 | biological_process | cell division |
| A | 0060252 | biological_process | positive regulation of glial cell proliferation |
| A | 0072357 | cellular_component | PTW/PP1 phosphatase complex |
| A | 0098793 | cellular_component | presynapse |
| A | 0098794 | cellular_component | postsynapse |
| A | 0098978 | cellular_component | glutamatergic synapse |
