4UXX
Structure of delta4-DgkA with AMPPCP in 9.9 MAG
GO(遺伝子オントロジー)由来の情報
鎖名 | GO(遺伝子オントロジー)id | 名前空間 | 内容 |
A | 0004143 | molecular_function | ATP-dependent diacylglycerol kinase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005886 | cellular_component | plasma membrane |
A | 0006654 | biological_process | phosphatidic acid biosynthetic process |
A | 0008610 | biological_process | lipid biosynthetic process |
A | 0008654 | biological_process | phospholipid biosynthetic process |
A | 0009411 | biological_process | response to UV |
A | 0016020 | cellular_component | membrane |
A | 0016301 | molecular_function | kinase activity |
A | 0016310 | biological_process | phosphorylation |
A | 0042802 | molecular_function | identical protein binding |
A | 0046872 | molecular_function | metal ion binding |
B | 0004143 | molecular_function | ATP-dependent diacylglycerol kinase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005886 | cellular_component | plasma membrane |
B | 0006654 | biological_process | phosphatidic acid biosynthetic process |
B | 0008610 | biological_process | lipid biosynthetic process |
B | 0008654 | biological_process | phospholipid biosynthetic process |
B | 0009411 | biological_process | response to UV |
B | 0016020 | cellular_component | membrane |
B | 0016301 | molecular_function | kinase activity |
B | 0016310 | biological_process | phosphorylation |
B | 0042802 | molecular_function | identical protein binding |
B | 0046872 | molecular_function | metal ion binding |
C | 0004143 | molecular_function | ATP-dependent diacylglycerol kinase activity |
C | 0005524 | molecular_function | ATP binding |
C | 0005886 | cellular_component | plasma membrane |
C | 0006654 | biological_process | phosphatidic acid biosynthetic process |
C | 0008610 | biological_process | lipid biosynthetic process |
C | 0008654 | biological_process | phospholipid biosynthetic process |
C | 0009411 | biological_process | response to UV |
C | 0016020 | cellular_component | membrane |
C | 0016301 | molecular_function | kinase activity |
C | 0016310 | biological_process | phosphorylation |
C | 0042802 | molecular_function | identical protein binding |
C | 0046872 | molecular_function | metal ion binding |
PDBデータベースに由来する情報
site_id | AC1 |
残基数 | 3 |
詳細 | BINDING SITE FOR RESIDUE ZN C 1121 |
鎖名 | 残基 |
C | GLU28 |
C | GLU76 |
C | ACP1123 |
site_id | AC2 |
残基数 | 2 |
詳細 | BINDING SITE FOR RESIDUE ZN C 1122 |
鎖名 | 残基 |
C | GLU76 |
C | ACP1123 |
site_id | AC3 |
残基数 | 3 |
詳細 | BINDING SITE FOR RESIDUE CL A 1121 |
鎖名 | 残基 |
A | ASN27 |
A | ALA29 |
A | ARG32 |
site_id | AC4 |
残基数 | 17 |
詳細 | BINDING SITE FOR RESIDUE ACP C 1123 |
鎖名 | 残基 |
B | TYR16 |
B | HOH2001 |
C | GLU28 |
C | ASN72 |
C | GLU76 |
C | GLU85 |
C | TYR86 |
C | HIS87 |
C | SER90 |
C | GLY91 |
C | LYS94 |
C | ASP95 |
C | ZN1121 |
C | ZN1122 |
C | OLC1125 |
C | HOH2004 |
B | ARG9 |
site_id | AC5 |
残基数 | 5 |
詳細 | BINDING SITE FOR RESIDUE MPD B 1122 |
鎖名 | 残基 |
A | ARG81 |
B | GLU88 |
B | LEU89 |
B | SER90 |
B | ARG92 |
site_id | AC6 |
残基数 | 3 |
詳細 | BINDING SITE FOR RESIDUE NA A 1122 |
鎖名 | 残基 |
A | GLU28 |
A | GLU76 |
A | ACT1123 |
site_id | AC7 |
残基数 | 3 |
詳細 | BINDING SITE FOR RESIDUE ACT A 1123 |
鎖名 | 残基 |
A | GLU28 |
A | GLU76 |
A | NA1122 |
site_id | AC8 |
残基数 | 7 |
詳細 | BINDING SITE FOR RESIDUE OLC C 1124 |
鎖名 | 残基 |
B | ARG9 |
B | ILE10 |
C | ALA30 |
C | GLN33 |
C | GLU34 |
C | CYS113 |
C | OLC1125 |
site_id | AC9 |
残基数 | 10 |
詳細 | BINDING SITE FOR RESIDUE OLC B 1123 |
鎖名 | 残基 |
A | SER17 |
A | CYS113 |
A | TRP117 |
B | GLU34 |
B | ALA37 |
B | ILE44 |
B | GLU69 |
B | ASN72 |
B | LEU102 |
B | OLC1124 |
site_id | BC1 |
残基数 | 7 |
詳細 | BINDING SITE FOR RESIDUE OLC B 1124 |
鎖名 | 残基 |
A | ILE10 |
A | TRP117 |
B | GLN33 |
B | GLU34 |
B | TRP112 |
B | TRP117 |
B | OLC1123 |
site_id | BC2 |
残基数 | 3 |
詳細 | BINDING SITE FOR RESIDUE OLC A 1124 |
鎖名 | 残基 |
A | TRP18 |
A | TRP25 |
A | ILE26 |
site_id | BC3 |
残基数 | 12 |
詳細 | BINDING SITE FOR RESIDUE OLC A 1125 |
鎖名 | 残基 |
A | GLN33 |
A | GLU34 |
A | ALA37 |
A | ILE44 |
A | VAL62 |
A | ALA108 |
A | VAL109 |
A | TRP112 |
A | LEU116 |
B | LEU39 |
B | LEU40 |
B | TRP47 |
site_id | BC4 |
残基数 | 10 |
詳細 | BINDING SITE FOR RESIDUE OLC C 1125 |
鎖名 | 残基 |
B | ALA13 |
B | SER17 |
C | GLU69 |
C | ASN72 |
C | SER98 |
C | LEU102 |
C | ILE106 |
C | VAL109 |
C | ACP1123 |
C | OLC1124 |
site_id | BC5 |
残基数 | 8 |
詳細 | BINDING SITE FOR RESIDUE ACT B 1125 |
鎖名 | 残基 |
B | GLU76 |
B | GLY83 |
B | SER84 |
B | GLU85 |
B | TYR86 |
B | HIS87 |
B | LYS94 |
B | NA1126 |
site_id | BC6 |
残基数 | 3 |
詳細 | BINDING SITE FOR RESIDUE NA B 1126 |
鎖名 | 残基 |
B | GLU28 |
B | GLU76 |
B | ACT1125 |
site_id | BC7 |
残基数 | 2 |
詳細 | BINDING SITE FOR RESIDUE NA C 1126 |
鎖名 | 残基 |
C | GLU88 |
C | GLU88 |
site_id | BC8 |
残基数 | 1 |
詳細 | BINDING SITE FOR RESIDUE ACT A 1126 |
鎖名 | 残基 |
A | HIS119 |
UniProtにおけるモチーフ・データベースPROSITEからの機能情報
site_id | PS01069 |
残基数 | 12 |
詳細 | DAGK_PROKAR Prokaryotic diacylglycerol kinase signature. ElLNSAIEavVD |
鎖名 | 残基 | 詳細 |
A | GLU69-ASP80 |
SwissProt/UniProtに記載されている蛋白質分子機能情報
site_id | SWS_FT_FI1 |
残基数 | 87 |
詳細 | TOPO_DOM: Cytoplasmic => ECO:0000269|PubMed:8071224 |
鎖名 | 残基 | 詳細 |
A | ALA1-ALA30 | |
B | ALA1-ALA30 | |
C | ALA1-ALA30 |
site_id | SWS_FT_FI2 |
残基数 | 99 |
詳細 | TRANSMEM: Helical => ECO:0000305|PubMed:12379131, ECO:0000305|PubMed:8071224 |
鎖名 | 残基 | 詳細 |
A | PHE31-TRP47 | |
A | ASP51-VAL68 | |
B | PHE31-TRP47 | |
B | ASP51-VAL68 | |
C | PHE31-TRP47 | |
C | ASP51-VAL68 |
site_id | SWS_FT_FI3 |
残基数 | 6 |
詳細 | TOPO_DOM: Periplasmic => ECO:0000305|PubMed:12379131, ECO:0000305|PubMed:8071224 |
鎖名 | 残基 | 詳細 |
A | LEU48-VAL50 | |
B | LEU48-VAL50 | |
C | LEU48-VAL50 |
site_id | SWS_FT_FI4 |
残基数 | 75 |
詳細 | TOPO_DOM: Cytoplasmic => ECO:0000305|PubMed:8071224 |
鎖名 | 残基 | 詳細 |
A | GLU69-LYS94 | |
B | GLU69-LYS94 | |
C | GLU69-LYS94 |
site_id | SWS_FT_FI5 |
残基数 | 69 |
詳細 | TRANSMEM: Helical => ECO:0000305|PubMed:8071224 |
鎖名 | 残基 | 詳細 |
A | ASP95-SER118 | |
B | ASP95-SER118 | |
C | ASP95-SER118 |
site_id | SWS_FT_FI6 |
残基数 | 6 |
詳細 | TOPO_DOM: Periplasmic => ECO:0000269|PubMed:15919996, ECO:0000269|PubMed:8071224 |
鎖名 | 残基 | 詳細 |
A | HIS119-GLY121 | |
B | HIS119-GLY121 | |
C | HIS119-GLY121 |
site_id | SWS_FT_FI7 |
残基数 | 3 |
詳細 | ACT_SITE: Proton acceptor => ECO:0000305|PubMed:26673816 |
鎖名 | 残基 | 詳細 |
A | GLU69 | |
B | GLU69 | |
C | GLU69 |
site_id | SWS_FT_FI8 |
残基数 | 3 |
詳細 | BINDING: BINDING => ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538 |
鎖名 | 残基 | 詳細 |
A | ARG9 | |
B | ARG9 | |
C | ARG9 |
site_id | SWS_FT_FI9 |
残基数 | 3 |
詳細 | BINDING: BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129 |
鎖名 | 残基 | 詳細 |
A | ALA13 | |
B | ALA13 | |
C | ALA13 |
site_id | SWS_FT_FI10 |
残基数 | 15 |
詳細 | BINDING: BINDING => ECO:0000305|PubMed:26673816, ECO:0000305|Ref.26 |
鎖名 | 残基 | 詳細 |
A | TYR16 | |
B | LYS94 | |
C | TYR16 | |
C | GLU28 | |
C | GLU76 | |
C | GLU85 | |
C | LYS94 | |
A | GLU28 | |
A | GLU76 | |
A | GLU85 | |
A | LYS94 | |
B | TYR16 | |
B | GLU28 | |
B | GLU76 | |
B | GLU85 |
site_id | SWS_FT_FI11 |
残基数 | 3 |
詳細 | BINDING: BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:25055873, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26960129 |
鎖名 | 残基 | 詳細 |
A | ARG22 | |
B | ARG22 | |
C | ARG22 |
site_id | SWS_FT_FI12 |
残基数 | 3 |
詳細 | BINDING: BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:25055873, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129 |
鎖名 | 残基 | 詳細 |
A | ALA30 | |
B | ALA30 | |
C | ALA30 |
site_id | SWS_FT_FI13 |
残基数 | 3 |
詳細 | BINDING: BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129, ECO:0000305|Ref.25 |
鎖名 | 残基 | 詳細 |
A | TRP47 | |
B | TRP47 | |
C | TRP47 |
site_id | SWS_FT_FI14 |
残基数 | 3 |
詳細 | BINDING: BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:25055873, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129, ECO:0000305|Ref.25 |
鎖名 | 残基 | 詳細 |
A | ARG55 | |
B | ARG55 | |
C | ARG55 |
site_id | SWS_FT_FI15 |
残基数 | 3 |
詳細 | BINDING: BINDING => ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129, ECO:0000305|Ref.26 |
鎖名 | 残基 | 詳細 |
A | GLU69 | |
B | GLU69 | |
C | GLU69 |
site_id | SWS_FT_FI16 |
残基数 | 3 |
詳細 | BINDING: BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129 |
鎖名 | 残基 | 詳細 |
A | SER98 | |
B | SER98 | |
C | SER98 |
site_id | SWS_FT_FI17 |
残基数 | 3 |
詳細 | BINDING: BINDING => ECO:0000305|PubMed:23676677, ECO:0000305|PubMed:25012698, ECO:0000305|PubMed:25055873, ECO:0000305|PubMed:26673816, ECO:0000305|PubMed:26894538, ECO:0000305|PubMed:26960129, ECO:0000305|Ref.26 |
鎖名 | 残基 | 詳細 |
A | TRP112 | |
B | TRP112 | |
C | TRP112 |