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4URM

Crystal Structure of Staph GyraseB 24kDa in complex with Kibdelomycin

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A0005524molecular_functionATP binding
A0006265biological_processDNA topological change
B0003677molecular_functionDNA binding
B0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
B0005524molecular_functionATP binding
B0006265biological_processDNA topological change
C0003677molecular_functionDNA binding
C0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
C0005524molecular_functionATP binding
C0006265biological_processDNA topological change
D0003677molecular_functionDNA binding
D0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
D0005524molecular_functionATP binding
D0006265biological_processDNA topological change
Functional Information from PDB Data
site_idAC1
Number of Residues19
DetailsBINDING SITE FOR RESIDUE XAM A 2000
ChainResidue
AASN54
AILE102
ALEU106
AHIS107
AALA108
AGLY109
AGLY110
ALYS111
ATHR173
AILE175
AHOH2003
ASER55
AGLU58
AASP81
AARG84
AILE86
AGLN91
ALYS93
AMET94

site_idAC2
Number of Residues18
DetailsBINDING SITE FOR RESIDUE XAM B 2000
ChainResidue
BASN54
BSER55
BGLU58
BASP81
BARG84
BILE86
BGLN91
BLYS93
BILE102
BHIS107
BALA108
BGLY109
BGLY110
BLYS111
BPHE112
BHOH2001
CARG200
CGLU201

site_idAC3
Number of Residues15
DetailsBINDING SITE FOR RESIDUE XAM C 2000
ChainResidue
CASN54
CSER55
CGLU58
CASP81
CGLY85
CILE86
CPRO87
CVAL101
CILE102
CVAL105
CHIS107
CALA108
CGLY109
CTHR173
CILE175

site_idAC4
Number of Residues17
DetailsBINDING SITE FOR RESIDUE XAM D 2000
ChainResidue
DASN54
DSER55
DGLU58
DASP81
DARG84
DGLY85
DILE86
DPRO87
DALA98
DVAL101
DILE102
DVAL105
DHIS107
DALA108
DGLY109
DTHR173
DILE175

Functional Information from PROSITE/UniProt
site_idPS00154
Number of Residues7
DetailsATPASE_E1_E2 E1-E2 ATPases phosphorylation site. DKTGTVI
ChainResidueDetails
AASP169-ILE175

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PDB entries from 2025-06-11

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