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4UMB

Structural analysis of substrate-mimicking inhibitors in complex with Neisseria meningitidis 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase - the importance of accommodating the active site water

Functional Information from GO Data
ChainGOidnamespacecontents
A0003849molecular_function3-deoxy-7-phosphoheptulonate synthase activity
A0005737cellular_componentcytoplasm
A0008652biological_processamino acid biosynthetic process
A0009058biological_processbiosynthetic process
A0009073biological_processaromatic amino acid family biosynthetic process
A0009423biological_processchorismate biosynthetic process
A0016740molecular_functiontransferase activity
A0042802molecular_functionidentical protein binding
A0046872molecular_functionmetal ion binding
B0003849molecular_function3-deoxy-7-phosphoheptulonate synthase activity
B0005737cellular_componentcytoplasm
B0008652biological_processamino acid biosynthetic process
B0009058biological_processbiosynthetic process
B0009073biological_processaromatic amino acid family biosynthetic process
B0009423biological_processchorismate biosynthetic process
B0016740molecular_functiontransferase activity
B0042802molecular_functionidentical protein binding
B0046872molecular_functionmetal ion binding
C0003849molecular_function3-deoxy-7-phosphoheptulonate synthase activity
C0005737cellular_componentcytoplasm
C0008652biological_processamino acid biosynthetic process
C0009058biological_processbiosynthetic process
C0009073biological_processaromatic amino acid family biosynthetic process
C0009423biological_processchorismate biosynthetic process
C0016740molecular_functiontransferase activity
C0042802molecular_functionidentical protein binding
C0046872molecular_functionmetal ion binding
D0003849molecular_function3-deoxy-7-phosphoheptulonate synthase activity
D0005737cellular_componentcytoplasm
D0008652biological_processamino acid biosynthetic process
D0009058biological_processbiosynthetic process
D0009073biological_processaromatic amino acid family biosynthetic process
D0009423biological_processchorismate biosynthetic process
D0016740molecular_functiontransferase activity
D0042802molecular_functionidentical protein binding
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN C 1350
ChainResidue
CCYS63
CHIS270
CGLU304
CASP324
C0V51351

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN B 1350
ChainResidue
B0V51351
BHOH2012
BCYS63
BHIS270
BGLU304
BASP324

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 1351
ChainResidue
ACYS63
AHIS270
AGLU304
AASP324
A0V51353

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN D 1350
ChainResidue
DCYS63
DHIS270
DGLU304
DASP324
D0V51351

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 A 1352
ChainResidue
AARG101
ATHR102
AHOH2186

site_idAC6
Number of Residues18
DetailsBINDING SITE FOR RESIDUE 0V5 C 1351
ChainResidue
CCYS63
CARG94
CTYR96
CLYS99
CGLU145
CGLY165
CALA166
CARG167
CLYS188
CARG236
CHIS270
CGLU304
CASP324
CMN1350
CHOH2051
CHOH2077
CHOH2093
CHOH2098

site_idAC7
Number of Residues17
DetailsBINDING SITE FOR RESIDUE 0V5 D 1351
ChainResidue
DCYS63
DARG94
DTYR96
DLYS99
DGLU145
DGLY165
DALA166
DARG167
DLYS188
DARG236
DHIS270
DGLU304
DMN1350
DHOH2049
DHOH2073
DHOH2085
DHOH2087

site_idAC8
Number of Residues18
DetailsBINDING SITE FOR RESIDUE 0V5 A 1353
ChainResidue
ACYS63
AARG94
ATYR96
ALYS99
AGLU145
AGLY165
AALA166
AARG167
ALYS188
AARG236
AHIS270
AGLU304
AASP324
AMN1351
AHOH2057
AHOH2092
AHOH2109
AHOH2114

site_idAC9
Number of Residues18
DetailsBINDING SITE FOR RESIDUE 0V5 B 1351
ChainResidue
BCYS63
BARG94
BLYS99
BGLU145
BGLY165
BALA166
BARG167
BLYS188
BARG236
BHIS270
BGLU304
BASP324
BMN1350
BHOH2012
BHOH2034
BHOH2067
BHOH2078
BHOH2080

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 B 1352
ChainResidue
BARG101
BTHR102
BHOH2041
BHOH2043

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PO4 C 1352
ChainResidue
CARG101
CTHR102

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PO4 D 1352
ChainResidue
DARG101
DTHR102

239149

PDB entries from 2025-07-23

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