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4U7C

Structure of DNA polymerase kappa in complex with benzopyrene adducted DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006281biological_processDNA repair
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue MG A 601
ChainResidue
AASP107
AMET108
AASP198
A0KX602

site_idAC2
Number of Residues14
Detailsbinding site for residue 0KX A 602
ChainResidue
ASER137
ATHR138
ATYR141
AARG144
AASP198
ALYS328
AMG601
CDG13
DVKJ5
AASP107
AMET108
AALA110
APHE111
ATYR112

site_idAC3
Number of Residues4
Detailsbinding site for residue PEG A 603
ChainResidue
ALYS459
ALYS461
AVAL467
CDA9

site_idAC4
Number of Residues5
Detailsbinding site for residue EDO B 601
ChainResidue
BGLY131
BSER132
BMET135
BPRO169
TVKJ5

site_idAC5
Number of Residues4
Detailsbinding site for residue MG B 602
ChainResidue
BASP107
BMET108
BASP198
B0KX603

site_idAC6
Number of Residues13
Detailsbinding site for residue 0KX B 603
ChainResidue
BASP107
BMET108
BALA110
BPHE111
BSER137
BTHR138
BTYR141
BARG144
BASP198
BLYS328
BMG602
PDG13
TVKJ5

site_idAC7
Number of Residues3
Detailsbinding site for residue PEG B 604
ChainResidue
BPHE171
BHOH726
TVKJ5

site_idAC8
Number of Residues3
Detailsbinding site for residue PEG B 605
ChainResidue
BTYR432
BLYS489
BHOH710

site_idAC9
Number of Residues19
Detailsbinding site for Di-nucleotide DG D 4 and VKJ D 5
ChainResidue
ATHR44
ASER47
APHE49
ATYR112
ASER134
AMET135
ASER137
AALA151
APRO153
APRO169
ATHR421
AARG507
A0KX602
AHOH708
AHOH722
CDG13
DDT3
DDC6
DHOH108

site_idAD1
Number of Residues18
Detailsbinding site for Di-nucleotide VKJ D 5 and DC D 6
ChainResidue
ATYR112
AMET135
ASER137
AALA151
APRO169
AGLU419
ATHR421
AARG507
ALEU508
A0KX602
AHOH708
AHOH722
CDG13
DDG4
DDT7
DHOH101
DHOH108
DHOH109

site_idAD2
Number of Residues18
Detailsbinding site for Di-nucleotide DG T 4 and VKJ T 5
ChainResidue
B0KX603
BPEG604
BHOH726
PDG13
TDT3
TDC6
BTHR44
BSER47
BPHE49
BTYR112
BSER134
BMET135
BALA151
BPRO153
BILE156
BPHE171
BARG507
BEDO601

site_idAD3
Number of Residues16
Detailsbinding site for Di-nucleotide VKJ T 5 and DC T 6
ChainResidue
BTYR112
BMET135
BALA151
BPHE171
BGLU419
BTHR421
BARG507
BLEU508
BEDO601
B0KX603
BPEG604
BHOH712
BHOH726
PDG13
TDG4
TDT7

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP107
AASP198
AGLU199
BASP107
BASP198
BGLU199

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PDB entries from 2024-07-17

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