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4TQR

Ternary complex of Y-family DNA polymerase Dpo4 with (5'S)-8,5'-Cyclo-2'-deoxyguanosine and dTTP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0009432biological_processSOS response
A0016740molecular_functiontransferase activity
A0016779molecular_functionnucleotidyltransferase activity
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MG A 401
ChainResidue
AASP7
APHE8
AASP105
AHOH706
TTTP101

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 402
ChainResidue
AHOH817
PHOH257
AALA181
AILE186
AHOH795
AHOH816

site_idAC3
Number of Residues6
Detailsbinding site for residue MG A 403
ChainResidue
AASP105
AGLU106
AHOH703
TDC2
TTTP101
THOH248

site_idAC4
Number of Residues8
Detailsbinding site for residue DOC P 101
ChainResidue
AGLY185
PDT12
PHOH231
PHOH232
TDA3
TDG6
TDA7
THOH217

site_idAC5
Number of Residues7
Detailsbinding site for residue CA P 102
ChainResidue
PHOH242
PHOH243
PHOH245
PHOH249
THOH275
THOH276
THOH279

site_idAC6
Number of Residues24
Detailsbinding site for residue TTP T 101
ChainResidue
AASP7
APHE8
ATYR10
APHE11
ATHR45
AARG51
AASP105
ALYS159
AMG401
AMG403
AHOH703
TDT1
TDC2
TDA3
THOH216
THOH248
THOH250
THOH261
THOH265
THOH283
THOH294
THOH295
THOH297
THOH299

site_idAC7
Number of Residues7
Detailsbinding site for residue CA T 102
ChainResidue
AHOH591
TDC2
T2LF5
THOH218
THOH220
THOH254
THOH255

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE:
ChainResidueDetails
AGLU106

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105

site_idSWS_FT_FI3
Number of Residues1
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12

218500

PDB entries from 2024-04-17

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